Browse Element(s) Details


Os.12120.1.S1_at

Description gb:AK120440.1
DB_XREF= gi:37990063
TID=Os.12120.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098I09, full insert sequence.
FL= gb:AK120440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3312011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33090OsAffx.31999.2.S1_at11/1112+19990275..19992189Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os12g33100Os.27776.1.S1_at11/1112+20000190..20004313guanylate kinase, putative, expressed
LOC_Os12g33110OsAffx.32000.1.S1_at10/1112+20011516..20012263hypothetical protein
LOC_Os12g33120Os.12120.1.S1_at11/1112+20013727..20014553expressed protein
LOC_Os12g33130Os.5390.1.S1_at10/1112+20017000..20017755expressed protein
LOC_Os12g33140OsAffx.32001.1.S1_at11/1112+20023809..20024456hypothetical protein
LOC_Os12g33150NANA12+20029724..20030981expressed protein
LOC_Os12g33160Os.38756.1.S1_s_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S1_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S2_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.3.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_at8/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.39045.1.S1_x_at1/1112+20033006..20038366NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12120.1.S1_at--860--3131Chr12:20013759..20013783 (25 bp)
AATTATTGACACTACATTTGAGACA
LOC_Os12g33120
Os.12120.1.S1_at--225--7151Chr12:20013815..20013839 (25 bp)
GTCTACCAATGGGAGCAGCGTGATG
LOC_Os12g33120
Os.12120.1.S1_at--1013--4651Chr12:20013832..20013856 (25 bp)
GCGTGATGATCAGCCCTGTGGTGCA
LOC_Os12g33120
Os.12120.1.S1_at--1009--391Chr12:20013840..20013864 (25 bp)
ATCAGCCCTGTGGTGCAAGGAAAGA
LOC_Os12g33120
Os.12120.1.S1_at--125--9051Chr12:20013865..20013889 (25 bp)
TGCAGCAGGGCGTCATGAACGGCAT
LOC_Os12g33120
Os.12120.1.S1_at--761--5031Chr12:20014019..20014041 (23 bp)
GCAGAACTCTAACATCGGCAACAGC
LOC_Os12g33120
Os.12120.1.S1_at--508--491Chr12:20014030..20014054 (25 bp)
ATCGGCAACAGCACGAGTGTCCCTG
LOC_Os12g33120
Os.12120.1.S1_at--927--4951Chr12:20014330..20014354 (25 bp)
GCATAATTAAGCTTGAACGAACGAA
LOC_Os12g33120
Os.12120.1.S1_at--832--5211Chr12:20014356..20014380 (25 bp)
GAATTATGTGTGCTGCAACCAAATA
LOC_Os12g33120
Os.12120.1.S1_at--1120--3431Chr12:20014440..20014464 (25 bp)
CATGGGCCTAGCTGGGACTAAGCTA
LOC_Os12g33120
Os.12120.1.S1_at--278--2731Chr12:20014529..20014553 (25 bp)
AAGATATACCTTGTTTACATACTCC
LOC_Os12g33120
Target Sequence 
AATTATTGACACTACATTTGAGACAAAAAAAANACACTTAGACACATAATTAACCATGTCTACCAATGGGAGCAGCGTGA
TGATCAGCCCTGTGGTGCAAGGAAAGATGCAGCAGGGCGTCATGAACGGCATGCAGAACTCTAACATCGGCAACAGCACG
AGTGTCCCTGTGTCTGGCTCCAGCTTCAATGGCACTGCCTTCCTCAGTGGCAACTATGCTAATGCACCTGCACCGGCTCG
GCAGGTTCCAAGTTTTTCTATTACTGGCATAGGAGGGAACGCAACCTTCTAAGCAGCTAGCCTCAGATGGCAAAAGGACC
AGCATGCATAATTAAGCTTGAACGAACGAATGAATTATGTGTGCTGCAACCAAATAAAAAACCGCTTAATAGCGTGTTTG
TAATATAATCCTATATATGTATGATTAAATAAAATCATGGGCCTAGCTGGGACTAAGCTAAAAAGGCATTTTAATTGATA
CATATGGATTAATGGATTAANNNANNNNTCAGTGTATGACTCAGAAGATATACCTTGTTTACATACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis