Browse Element(s) Details


Os.12139.1.S1_at

Description gb:AK101969.1
DB_XREF= gi:32987178
TID=Os.12139.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20116 pathogenesis-related protein-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076J18, full insert sequence.
FL= gb:AY224422.1 gb:AK101969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g394502/11Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39420Os.26047.1.S1_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_s_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.1.S1_x_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_at4/118+24796731..24801938expressed protein
LOC_Os08g39430Os.47358.1.A1_at11/118+24802771..24803773expressed protein
LOC_Os08g39440Os.7534.2.S1_a_at11/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39440Os.2240.2.A1_at1/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39450Os.12139.1.S1_at2/118+24821094..24822077Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os08g39460Os.52825.1.S1_at11/118+24832923..24834505Protein kinase domain containing protein, expressed
LOC_Os08g39470OsAffx.17418.1.S1_at10/118+24838102..24840776hypothetical protein
LOC_Os08g39480NANA8+24843443..24843772hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12139.1.S1_at--968--10371Chr08:24821772..24821796 (25 bp)
TTTTCTTTTCCTGAGAGCTTCTTAA
LOC_Os08g39450
Os.12139.1.S1_at--1072--7251Chr08:24821971..24821995 (25 bp)
GTCCTCCCACAAATCTCTATTTAAT
LOC_Os08g39450
Os.12139.1.S1_at--552--5911Chr08:24822054..24822078 (25 bp)
GAGCTAGTGGCATCTTTCTTTTTAT
NONE
Os.12139.1.S1_at--615--10851Chr08:24822104..24822128 (25 bp)
TTGGTTGTGAATTGCCCTGACAGCT
NONE
Os.12139.1.S1_at--614--3071Chr08:24822130..24822154 (25 bp)
AATCATTGACGCTACTTGGAGCCAT
NONE
Os.12139.1.S1_at--933--8071Chr08:24822147..24822171 (25 bp)
GGAGCCATCCATTAGTAGTTGAACC
NONE
Os.12139.1.S1_at--1056--3951Chr08:24822171..24822195 (25 bp)
CGGATTGGATTAGTTCGCCTGGCAT
NONE
Os.12139.1.S1_at--997--9311Chr08:24822185..24822209 (25 bp)
TCGCCTGGCATTATTGGTAGGTCCA
NONE
Os.12139.1.S1_at--586--7831Chr08:24822200..24822224 (25 bp)
GGTAGGTCCAAGTTGCGTACACTAA
NONE
Os.12139.1.S1_at--710--4631Chr08:24822214..24822238 (25 bp)
GCGTACACTAATTATTTCCCTGTTC
NONE
Os.12139.1.S1_at--900--7051Chr08:24822263..24822287 (25 bp)
GTAACCGTCCTGTATTCGAATTGAT
NONE
Target Sequence 
TTTTCTTTTCCTGAGAGCTTCTTAAAGGTGAAAGGGGAAAAAAAANGAAAGAAAAAGAAAAGGAGATGAGATGGGTGACT
CAAGATGCATCAAGCAAAGGAAGAACAATATGATGATGATGATGTTGTTGTTGTAGTGGTGGTTGAGGTTGGAAGTTGGA
TGGAAAGAGGGAGGAAGGAAGAAGATGGGGTTGTTGTGTTGTCCTCCCACAAATCTCTATTTAATTTTAATTCCCTTTTG
TATAAAATTTATTATTATCTGTGGAGAGCATTATTATCAGCTTGAGCTAGTGGCATCTTTCTTTTTATTATCTCCTCTTT
TTTTTCCTCCATTGGTTGTGAATTGCCCTGACAGCTCAATCATTGACGCTACTTGGAGCCATCCATTAGTAGTTGAACCG
GATTGGATTAGTTCGCCTGGCATTATTGGTAGGTCCAAGTTGCGTACACTAATTATTTCCCTGTTCTTTTTTTAAATTTT
GTTTAAGATAGGTAACCGTCCTGTATTCGAATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis