Browse Element(s) Details


Os.12142.1.S1_at

Description gb:AK066358.1
DB_XREF= gi:32976376
TID=Os.12142.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013063G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063G02, full insert sequence.
FL= gb:AK066358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1744011/11TMV-MP30 binding protein 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17400OsAffx.27685.1.S1_at11/116+10095791..10096168hypothetical protein
LOC_Os06g17410OsAffx.15472.1.S1_at3/116+10100313..10101516Dof domain, zinc finger family protein, expressed
LOC_Os06g17419OsAffx.9243.1.S1_at1/116+10104233..10104550NA
LOC_Os06g17430OsAffx.27944.1.S1_x_at6/116+10107397..10107660hypothetical protein
LOC_Os06g17430OsAffx.27944.1.S1_at5/116+10107397..10107660hypothetical protein
LOC_Os06g17440Os.12142.1.S1_at11/116+10119999..10123401TMV-MP30 binding protein 2C, putative, expressed
LOC_Os06g17450OsAffx.15474.1.S1_s_at11/116+10125760..10126396expressed protein
LOC_Os06g17460OsAffx.15475.1.S1_at11/116+10130034..10130805Fasciclin domain containing protein
LOC_Os06g17470OsAffx.27686.1.S1_at11/116+10134169..10134609hypothetical protein
LOC_Os06g17480Os.9495.1.S1_at11/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17480OsAffx.23994.1.S1_x_at1/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17490Os.52453.1.S1_at11/116+10145844..10148403Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12142.1.S1_at--552--5991Chr06:10121048..10121072 (25 bp)
GAGACGCCAGGTTGCTGACAAGGAA
LOC_Os06g17440
Os.12142.1.S1_at--256--371Chr06:10121088..10121112 (25 bp)
ATCAATTCTCAGCTGCACAATGCGA
LOC_Os06g17440
Os.12142.1.S1_at--47--5471Chr06:10122329..10122353 (25 bp)
GAACTCCAAGATGGTAGCTTGCCAT
LOC_Os06g17440
Os.12142.1.S1_at--414--6771Chr06:10123134..10123158 (25 bp)
GTTACATATGCCGAAGCTCTTGCTG
LOC_Os06g17440
Os.12142.1.S1_at--272--5451Chr06:10123169..10123193 (25 bp)
GAACCCAAACGAGGAGCAGCTGAAT
LOC_Os06g17440
Os.12142.1.S1_at--874--2711Chr06:10123204..10123228 (25 bp)
AAGCACGGTTAAGGCTGCAGGTCCT
LOC_Os06g17440
Os.12142.1.S1_at--828--1031Chr06:10123222..10123246 (25 bp)
AGGTCCTTGTGCTATGATGCGCCAA
LOC_Os06g17440
Os.12142.1.S1_at--923--4551Chr06:10123240..10123264 (25 bp)
GCGCCAAGTGCATATTGTAGTGTAT
LOC_Os06g17440
Os.12142.1.S1_at--43--7311Chr06:10123301..10123325 (25 bp)
GTGCGTGCTTGATCGAGTTTATTTC
LOC_Os06g17440
Os.12142.1.S1_at--540--191Chr06:10123321..10123345 (25 bp)
ATTTCATGTGAGACCGTACTGACGG
LOC_Os06g17440
Os.12142.1.S1_at--250--5751Chr06:10123341..10123365 (25 bp)
GACGGTAATCGATCAAGCACCAGAT
LOC_Os06g17440
Target Sequence 
GAGACGCCAGGTTGCTGACAAGGAAGGTTTGATCAAATCTATCAATTCTCAGCTGCACAATGCGAAGATTATGCTTGCAG
ACAAGCAAGCATCATTAGAGAAATTAGAATGGGAGGTGAAGACGTCAAATAAGAAAGTAGAAGATCTTCAAGGGGATGTC
TCCAATATGGAGTTTGAGATAGGTTCGTTGATGGCATTATTCGAAAAAATTTCGGAGAATGTTTCAGGTGAACTCCAAGA
TGGTAGCTTGCCATCATCTTTTGAATTGGAAGCACTTCAATCAACTAGCGAAATCGACAAGATTGAGGTTGAGAAGATAG
AGCAAGAAGCGGTTACATATGCCGAAGCTCTTGCTGCAGCAAGAGAGAACCCAAACGAGGAGCAGCTGAATATAGCTGCG
GAAGCACGGTTAAGGCTGCAGGTCCTTGTGCTATGATGCGCCAAGTGCATATTGTAGTGTATGTGTATGATAATGTCGAA
TCGCTGATGTAATTATGTGTGCGTGCTTGATCGAGTTTATTTCATGTGAGACCGTACTGACGGTAATCGATCAAGCACCA
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis