Browse Element(s) Details


Os.12175.1.S1_at

Description gb:AK066420.1
DB_XREF= gi:32976438
TID=Os.12175.1
CNT=65
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067J21, full insert sequence.
FL= gb:AK066420.1 gb:AK062239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4393011/11DnaJ protein homolog 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43870Os.4943.1.S1_at11/112+26488631..26491835Protein kinase domain containing protein, expressed
LOC_Os02g43880OsAffx.12482.1.S1_at11/112+26492948..26493430hypothetical protein
LOC_Os02g43890OsAffx.12483.1.S1_at11/112+26493899..26494502hypothetical protein
LOC_Os02g43900Os.50743.1.S1_at11/112+26495314..26496568expressed protein
LOC_Os02g43906Os.26831.1.A1_a_at11/112+26498487..26501649ceramide kinase, putative, expressed
LOC_Os02g43912OsAffx.2952.1.S1_at11/112+26501953..26504208ceramide kinase, putative, expressed
LOC_Os02g43920Os.22624.2.S1_at11/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43920Os.46566.2.A1_at1/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43930Os.12175.1.S1_at11/112+26513465..26517486DnaJ protein homolog 2, putative, expressed
LOC_Os02g43940Os.50637.1.S1_at11/112+26518717..26519783AP2 domain containing protein, expressed
LOC_Os02g43950OsAffx.24713.1.S1_x_at3/112+26538183..26539090expressed protein
LOC_Os02g43960NANA2+26539842..26540902hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12175.1.S1_at--270--10511Chr02:26516898..26516922 (25 bp)
TTCAACGTGGAGTTTCCTGAGCCTG
LOC_Os02g43930
Os.12175.1.S1_at--483--8451Chr02:26516936..26516960 (25 bp)
TGGCCAATGCCGATCGCTTGAGAAG
LOC_Os02g43930
Os.12175.1.S1_at--552--10771Chr02:26516953..26516977 (25 bp)
TTGAGAAGATTTTGCCACCACGACC
LOC_Os02g43930
Os.12175.1.S1_at--976--3211Chr02:26517127..26517151 (25 bp)
CAAGGGTACAGTGTGCCCAGCAGTA
LOC_Os02g43930
Os.12175.1.S1_at--91--5511Chr02:26517153..26517177 (25 bp)
GAACAATTCGATGCCATTCGGACTA
LOC_Os02g43930
Os.12175.1.S1_at--956--6531Chr02:26517181..26517205 (25 bp)
GATTTAGCGTCTCTTATCATCCAAA
LOC_Os02g43930
Os.12175.1.S1_at--963--2751Chr02:26517204..26517228 (25 bp)
AAGACCGCGGTAGCTACTGAGTTCA
LOC_Os02g43930
Os.12175.1.S1_at--621--6791Chr02:26517302..26517326 (25 bp)
GTTATGCTACCATTTTTGTTGTCTT
LOC_Os02g43930
Os.12175.1.S1_at--785--7131Chr02:26517349..26517373 (25 bp)
GTCATAATGATGTTGCGGCCTCACT
LOC_Os02g43930
Os.12175.1.S1_at--1137--8791Chr02:26517359..26517383 (25 bp)
TGTTGCGGCCTCACTACAATTATTA
LOC_Os02g43930
Os.12175.1.S1_at--767--2231Chr02:26517374..26517398 (25 bp)
ACAATTATTACAGCCTGCCGTATTA
LOC_Os02g43930
Target Sequence 
TTCAACGTGGAGTTTCCTGAGCCTGGTGCACTCACTCCTGGCCAATGCCGATCGCTTGAGAAGATTTTGCCACCACGACC
CAGGAATCAATTGTCAGACATGGAGCTAGATCAATGTGAGGAGACCACCATGCATGATGTCAACATAGAAGAGGAGATGA
GGCGCAGGCAGCAGCACAGGCGGCAGGAAGCATATGATGAAGACGACGACGAGGATGCTGGAGCTGGACCAAGGGTACAG
TGTGCCCAGCAGTAAGAACAATTCGATGCCATTCGGACTAGACGATTTAGCGTCTCTTATCATCCAAAGACCGCGGTAGC
TACTGAGTTCATTCTATTCTTTTTTTTAATGTACCCCCACCTAAAGTAGCTGATGCATGTTATGATTTCTCTTTTGTGGG
AAATGTTATGCTACCATTTTTGTTGTCTTAAGATTAAGGAGCTTGCTATTAGTCATAATGATGTTGCGGCCTCACTACAA
TTATTACAGCCTGCCGTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis