Browse Element(s) Details


Os.12183.1.S1_at

Description gb:AK120702.1
DB_XREF= gi:37990325
TID=Os.12183.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170O17, full insert sequence.
FL= gb:AK120702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3303011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33010OsAffx.8572.1.S1_s_at6/114+19783235..19786780transposon protein, putative, Mutator sub-class
LOC_Os04g33010OsAffx.8572.1.S1_at5/114+19783235..19786780transposon protein, putative, Mutator sub-class
LOC_Os04g33020NANA4+19796688..19797248hypothetical protein
LOC_Os04g33030Os.12183.1.S1_at11/114+19807021..19808797expressed protein
LOC_Os04g33040Os.7294.1.S1_at11/114+19818732..19822160Alpha amylase, catalytic domain containing protein, expressed
LOC_Os04g33050Os.50201.1.S1_at11/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33050Os.9965.1.S1_at1/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33060Os.21228.1.S1_at11/114+19828386..19832229NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g33070Os.38834.1.S1_at1/114+19832690..19832959hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12183.1.S1_at--563--1811Chr04:19808506..19808530 (25 bp)
ACCCATGTGATCTTGGCGGACACTG
LOC_Os04g33030
Os.12183.1.S1_at--69--8151Chr04:19808523..19808547 (25 bp)
GGACACTGAGCTTTTGTTGCACGCC
LOC_Os04g33030
Os.12183.1.S1_at--68--6671Chr04:19808538..19808562 (25 bp)
GTTGCACGCCAGTAGAAGTCACCCA
LOC_Os04g33030
Os.12183.1.S1_at--358--5331Chr04:19808552..19808576 (25 bp)
GAAGTCACCCACAAAGTTGCATCTA
LOC_Os04g33030
Os.12183.1.S1_at--555--4971Chr04:19808570..19808594 (25 bp)
GCATCTAGTTTAGGTTAAATCCTCT
LOC_Os04g33030
Os.12183.1.S1_at--492--10451Chr04:19808602..19808626 (25 bp)
TTACCTGTAGGTTTACCTGTCAATG
LOC_Os04g33030
Os.12183.1.S1_at--1040--2971Chr04:19808623..19808647 (25 bp)
AATGTAATCAGCTAACCCTACTTTG
LOC_Os04g33030
Os.12183.1.S1_at--588--4831Chr04:19808633..19808657 (25 bp)
GCTAACCCTACTTTGCTGTCCATAA
LOC_Os04g33030
Os.12183.1.S1_at--692--711Chr04:19808676..19808700 (25 bp)
ATGATTAGCCCCAACTTTTTTGTGG
LOC_Os04g33030
Os.12183.1.S1_at--749--4971Chr04:19808739..19808763 (25 bp)
GCATGCACCAGGTCTAGCCTTAAAA
LOC_Os04g33030
Os.12183.1.S1_at--1135--7451Chr04:19808772..19808796 (25 bp)
GTGTCGACACTGTACTGTAGCACTC
LOC_Os04g33030
Target Sequence 
ACCCATGTGATCTTGGCGGACACTGAGCTTTTGTTGCACGCCAGTAGAAGTCACCCACAAAGTTGCATCTAGTTTAGGTT
AAATCCTCTTTTGTTATTACCTGTAGGTTTACCTGTCAATGTAATCAGCTAACCCTACTTTGCTGTCCATAACCCTTCAC
CCCCTTCTACATGATTAGCCCCAACTTTTTTGTGGTAAAGAAAACCCCCGATTGTATTCTCGATGAAATACATGCATGCA
CCAGGTCTAGCCTTAAAAGAAAAGCAGTGTCGACACTGTACTGTAGCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis