Browse Element(s) Details


Os.7294.1.S1_at

Description gb:CB623981
DB_XREF= gi:29618969
DB_XREF=OSIIEa12B17.r
CLONE=OSIIEa12B17
TID=Os.7294.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7294 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177740.1 (A.thaliana) alpha-amylase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3304011/11Alpha amylase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33020NANA4+19796688..19797248hypothetical protein
LOC_Os04g33030Os.12183.1.S1_at11/114+19807021..19808797expressed protein
LOC_Os04g33040Os.7294.1.S1_at11/114+19818732..19822160Alpha amylase, catalytic domain containing protein, expressed
LOC_Os04g33050Os.50201.1.S1_at11/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33050Os.9965.1.S1_at1/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33060Os.21228.1.S1_at11/114+19828386..19832229NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g33070Os.38834.1.S1_at1/114+19832690..19832959hypothetical protein
LOC_Os04g33080Os.12150.1.S1_s_at10/114+19834170..19836128protein phosphatase 2C, putative, expressed
LOC_Os04g33090NANA4+19847040..19849171hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0009507cellular_componentchloroplast
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7294.1.S1_at--793--8431Chr04:19821177..19821201 (25 bp)
GGCCATTCCCATCTGATCATATCAT
LOC_Os04g33040
Os.7294.1.S1_at--678--4891Chr04:19821517..19821541 (25 bp)
GCTTATATACTTACTCATCCTGGCA
LOC_Os04g33040
Os.7294.1.S1_at--332--4371Chr04:19821545..19821569 (25 bp)
CCACGGTGTTCTACGATCATTTCTA
LOC_Os04g33040
Os.7294.1.S1_at--555--3031Chr04:19821702..19821726 (25 bp)
AATGCCAGGACATACATAGCCGCTC
LOC_Os04g33040
Os.7294.1.S1_at--951--291Chr04:19821717..19821741 (25 bp)
ATAGCCGCTCCGCAGTCAAAATCTT
LOC_Os04g33040
Os.7294.1.S1_at--679--10851Chr04:19821740..19821764 (25 bp)
TTGGAGGCCAGCTCAGATCTGTACT
LOC_Os04g33040
Os.7294.1.S1_at--336--6411Chr04:19821755..19821779 (25 bp)
GATCTGTACTCTGCAATCGTTGACG
LOC_Os04g33040
Os.7294.1.S1_at--532--8351Chr04:19821841..19821865 (25 bp)
GGCGGCCTCTGGTGACAGATATGCT
LOC_Os04g33040
Os.7294.1.S1_at--629--4951Chr04:19821896..19821920 (25 bp)
GCATTTCTTTCTGCTGAACATGAGA
LOC_Os04g33040
Os.7294.1.S1_at--221--4871Chr04:19821924..19821948 (25 bp)
GCTATTTCTTCAGAGCCCGAACTGT
LOC_Os04g33040
Os.7294.1.S1_at--568--1891Chr04:19822076..19822100 (25 bp)
ACGTATACTGTAATGCTTGTGTGCA
LOC_Os04g33040
Target Sequence 
GGCCATTCCCATCTGATCATATCATGGAGGGATATGCTTATATACTTACTCATCCTGGCATCCCCACGGTGTTCTACGAT
CATTTCTATGGCAAAGATGATTCCTTCCATGGTGGAATTGCAAAACTGATGGAGATCAGGAAATGCCAGGACATACATAG
CCGCTCCGCAGTCAAAATCTTGGAGGCCAGCTCAGATCTGTACTCTGCAATCGTTGACGATAAGTTGTGCATGAAGATCG
GGGACGGCTCCTGGTGCCCGAGCGGCCCAGAGTGGAAGCTGGCGGCCTCTGGTGACAGATATGCTGTTTGGCACAAGTAG
ATATACCAACATATAGCATTTCTTTCTGCTGAACATGAGATATGCTATTTCTTCAGAGCCCGAACTGTATATGCTAGTAC
CATGGTAATTTAATCATCTTCAATGCAATACCAGAGAGCAANCCANTTGCANTTTATCACATGCTCACAGCAGATAGTGT
AAACTGTAATGCGAAGTGTAAACTGTAATGTGAATACGTATACTGTAATGCTTGTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis