Browse Element(s) Details


Os.38834.1.S1_at

Description gb:CB619423
DB_XREF= gi:29614410
DB_XREF=OSIIEa03P15.r
CLONE=OSIIEa03P15
TID=Os.38834.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.38834 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566554.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g330701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33030Os.12183.1.S1_at11/114+19807021..19808797expressed protein
LOC_Os04g33040Os.7294.1.S1_at11/114+19818732..19822160Alpha amylase, catalytic domain containing protein, expressed
LOC_Os04g33050Os.50201.1.S1_at11/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33050Os.9965.1.S1_at1/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33060Os.21228.1.S1_at11/114+19828386..19832229NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g33070Os.38834.1.S1_at1/114+19832690..19832959hypothetical protein
LOC_Os04g33080Os.12150.1.S1_s_at10/114+19834170..19836128protein phosphatase 2C, putative, expressed
LOC_Os04g33090NANA4+19847040..19849171hypothetical protein
LOC_Os04g33100OsAffx.14104.1.S1_at11/114+19851363..19851786hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38834.1.S1_at--745--2051Chr04:19833048..19833072 (25 bp)
ACTTCTTCATCTGAGTTTGTGTCAA
NONE
Os.38834.1.S1_at--203--6871Chr04:19833034..19833058 (25 bp)
GTTTGTGTCAAGTACTGTCGATCTA
NONE
Os.38834.1.S1_at--621--3211Chr04:19833026..19833050 (25 bp)
CAAGTACTGTCGATCTAATGTGAAG
NONE
Os.38834.1.S1_at--95--792Chr03:17052575..17052748 (25 bp)
ATGTGAAGTTTCTTTCGGTTTCGAG
NONE
Os.38834.1.S1_at--460--7491Chr04:19832767..19832791 (25 bp)
GGGCCGTCGACCACAGTCGGGTCAC
LOC_Os04g33070
Os.38834.1.S1_at--277--9191Chr04:19832683..19832707 (25 bp)
TGCCTCAAGCCGTACTAGCCTATGT
NONE
Os.38834.1.S1_at--639--1671Chr04:19832676..19832700 (25 bp)
AGCCGTACTAGCCTATGTCTATGTT
NONE
Os.38834.1.S1_at--241--3151Chr04:19832606..19832630 (25 bp)
AATTCAGTGGATCTACTTACGCAGC
NONE
Os.38834.1.S1_at--355--8571Chr04:19832599..19832623 (25 bp)
TGGATCTACTTACGCAGCCTTGACT
NONE
Os.38834.1.S1_at--11--4331Chr04:19832582..19832606 (25 bp)
CCTTGACTGCTGCACAGGACAAATT
NONE
Os.38834.1.S1_at--851--8091Chr04:19832539..19832563 (25 bp)
GGACCAAATTGATCTATCACATGAA
NONE
Target Sequence 
ACTTCTTCATCTGAGTTTGTGTCAAGTACTGTCGATCTAATGTGAAGTTTCTTTCGGTTTCGAGGTTAGTTTGTACTTTG
TAGTAGTTAGTTTTGGTAGAGTTCTGGGAGAGGATGGAGGTNTTCATCCACGAGGACTACGTGAACAAGCGCAACGAGGT
GAGGAGGGAGCAGAGGAGGAAGCAGCTGCAGATGGAGCAGGCGCTCGCCGGCGTGTCTCCGCCGGCGCCGGAGCCCCGGG
AGAGCCCGANAGTNCCGNCGCAGTGCCTGACACTGACCGGCGGGCCGTCGACCACAGTCGGGTCACCGNACGGCGAGCGC
GANCGGCGGCGGAAGCTGCCGAGACGGTGGGTCACCGTCTCTTTNGACTGCCTCAAGCCGTACTAGCCTATGTCTATGTT
NACATGTGCAACANGTNCAAGTGAATAAAGATGGATTTTATGGTGAAAATTCAGTGGATCTACTTACGCAGCCTTGACTG
CTGCACAGGACAAATTCCAACGGTTTACATTTTAGGACCAAATTGATCTATCACATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis