Browse Element(s) Details


OsAffx.14104.1.S1_at

Description tigr:9632.m03165
TID=OsAffx.14104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3310011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33050Os.50201.1.S1_at11/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33050Os.9965.1.S1_at1/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33060Os.21228.1.S1_at11/114+19828386..19832229NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g33070Os.38834.1.S1_at1/114+19832690..19832959hypothetical protein
LOC_Os04g33080Os.12150.1.S1_s_at10/114+19834170..19836128protein phosphatase 2C, putative, expressed
LOC_Os04g33090NANA4+19847040..19849171hypothetical protein
LOC_Os04g33100OsAffx.14104.1.S1_at11/114+19851363..19851786hypothetical protein
LOC_Os04g33110Os.26063.1.S1_at2/114+19858879..19861827hypothetical protein
LOC_Os04g33120OsAffx.20100.2.S1_at10/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.2.S1_x_at9/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.1.S1_x_at6/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.3.S1_x_at3/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33130NANA4+19870193..19870909hypothetical protein
LOC_Os04g33140OsAffx.14105.1.S1_at11/114+19874544..19876831hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14104.1.S1_at--377--10811Chr04:19851393..19851417 (25 bp)
TTGTCAATCATGAGCTGCACATACA
LOC_Os04g33100
OsAffx.14104.1.S1_at--661--411Chr04:19851399..19851423 (25 bp)
ATCATGAGCTGCACATACATTGTCA
LOC_Os04g33100
OsAffx.14104.1.S1_at--1029--8911Chr04:19851403..19851427 (25 bp)
TGAGCTGCACATACATTGTCAAGAC
LOC_Os04g33100
OsAffx.14104.1.S1_at--538--2071Chr04:19851415..19851689 (25 bp)
ACATTGTCAAGACCTTTAGTTGTGA
LOC_Os04g33100
OsAffx.14104.1.S1_at--269--7091Chr04:19851420..19851694 (25 bp)
GTCAAGACCTTTAGTTGTGAACCAG
LOC_Os04g33100
OsAffx.14104.1.S1_at--1143--1371Chr04:19851424..19851698 (25 bp)
AGACCTTTAGTTGTGAACCAGTGAA
LOC_Os04g33100
OsAffx.14104.1.S1_at--275--2631Chr04:19851689..19851713 (25 bp)
AACCAGTGAAAGTAAAGCCATGCAT
LOC_Os04g33100
OsAffx.14104.1.S1_at--179--5571Chr04:19851696..19851720 (25 bp)
GAAAGTAAAGCCATGCATGAAGGTG
LOC_Os04g33100
OsAffx.14104.1.S1_at--573--8971Chr04:19851719..19851743 (25 bp)
TGAAGGTTAAAGATAGGCGTGCTAA
LOC_Os04g33100
OsAffx.14104.1.S1_at--1023--2791Chr04:19851728..19851752 (25 bp)
AAGATAGGCGTGCTAAATTGCCGGT
LOC_Os04g33100
OsAffx.14104.1.S1_at--630--10091Chr04:19851732..19851756 (25 bp)
TAGGCGTGCTAAATTGCCGGTGAGA
LOC_Os04g33100
Target Sequence 
TTGTCAATCATGAGCTGCACATACATTGTCAAGACCTTTAGTTGTGAACCAGTGAAAGTAAAGCCATGCATGAAGGTGAA
GGTTAAAGATAGGCGTGCTAAATTGCCGGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis