Browse Element(s) Details


OsAffx.14105.1.S1_at

Description tigr:9632.m03169
TID=OsAffx.14105.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3314011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33100OsAffx.14104.1.S1_at11/114+19851363..19851786hypothetical protein
LOC_Os04g33110Os.26063.1.S1_at2/114+19858879..19861827hypothetical protein
LOC_Os04g33120OsAffx.20100.2.S1_at10/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.2.S1_x_at9/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.1.S1_x_at6/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.3.S1_x_at3/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33130NANA4+19870193..19870909hypothetical protein
LOC_Os04g33140OsAffx.14105.1.S1_at11/114+19874544..19876831hypothetical protein
LOC_Os04g33150Os.46073.1.A1_at11/114+19877802..19879256Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os04g33160OsAffx.26301.1.S1_at1/114+19880418..19880816hypothetical protein
LOC_Os04g33160OsAffx.14433.1.S1_at1/114+19880418..19880816hypothetical protein
LOC_Os04g33170OsAffx.26302.1.S1_at11/114+19885521..19885904hypothetical protein
LOC_Os04g33180OsAffx.14106.1.S1_at3/114+19886819..19887061hypothetical protein
LOC_Os04g33190Os.7877.1.S1_at11/114+19890383..19895680Acetyl-coenzyme A synthetase 2, putative, expressed
LOC_Os04g33200Os.9388.1.S1_at10/114+19896521..19904245expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14105.1.S1_at--33--8831Chr04:19876356..19876380 (25 bp)
TGTTGGCGAGGTTGAGCTCCGTCAC
LOC_Os04g33140
OsAffx.14105.1.S1_at--1158--6731Chr04:19876314..19876338 (25 bp)
GTTCACAGGTGACAGCCTCGAAGCC
LOC_Os04g33140
OsAffx.14105.1.S1_at--1111--9352Chr11:14460842..14460866 (25 bp)
TCGAAGCCGCACACGTTGTCGCCAT
NONE
OsAffx.14105.1.S1_at--112--3691Chr04:19876245..19876269 (25 bp)
CTAGGTCGTGGATGGCGTCCGCTTC
LOC_Os04g33140
OsAffx.14105.1.S1_at--421--10611Chr04:19876223..19876247 (25 bp)
TTCGGAAGCCAACTCAGCGACGTCG
LOC_Os04g33140
OsAffx.14105.1.S1_at--742--991Chr04:19874861..19874885 (25 bp)
AGGATGGCCTCCTGGAAGGTGCCAT
LOC_Os04g33140
OsAffx.14105.1.S1_at--846--2891Chr04:19874846..19874870 (25 bp)
AAGGTGCCATACATGTCGGCGAAGA
LOC_Os04g33140
OsAffx.14105.1.S1_at--150--1551Chr04:19874785..19874809 (25 bp)
AGCTAGTGGTTTGGGCGACACGCTT
LOC_Os04g33140
OsAffx.14105.1.S1_at--55--2831Chr04:19874608..19874632 (25 bp)
AAGTTGTCCGAGTAGCCAAGGAGCT
LOC_Os04g33140
OsAffx.14105.1.S1_at--897--4371Chr04:19874593..19874617 (25 bp)
CCAAGGAGCTACGAGGCAGCGACCG
LOC_Os04g33140
OsAffx.14105.1.S1_at--124--3391Chr04:19874577..19874601 (25 bp)
CAGCGACCGTGCAGCGGCCGACGAA
LOC_Os04g33140
Target Sequence 
TGTTGGCGAGGTTGAGCTCCGTCACCTTCCCCGACCCGCCCCGTTCACAGGTGACAGCCTCGAAGCCGCACACGTTGTCG
CCATCCCACCCTAGGGCCGGGACCGACTTGGCTAGGTCGTGGATGGCGTCCGCTTCGGAAGCCAACTCAGCGACGTCGGC
GGCGGCTATGATGAGGAGGAGGACGTTGGGGGCGTGCTTCCTGAGGTTGAGGATGGCCTCCTGGAAGGTGCCATACATGT
CGGCGAAGACGAAGAAGCCGTCGAGAAGGGAGGAGGCGGTAGATGAGCTAGTGGTTTGGGCGACACGCTTCTTCGGGAGG
AGGAGCAGGTTGGCAAGCGCGGCGTGGAGCGCGTGGAGGTGGGCGAGGCCTGCGGGGCGGTACGGCCGTGTTGGAGAGCC
AGAAGAGAACTGTTGTGATGATGGCATGGAGGTGGGAGAGCAACGGGTCGGAGCGACAAAGGAAGTTGTCCGAGTAGCCA
AGGAGCTACGAGGCAGCGACCGTGCAGCGGCCGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis