Browse Element(s) Details


Os.9388.1.S1_at

Description gb:AK107531.1
DB_XREF= gi:32992740
TID=Os.9388.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-G10, full insert sequence.
FL= gb:AK107531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3320010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33140OsAffx.14105.1.S1_at11/114+19874544..19876831hypothetical protein
LOC_Os04g33150Os.46073.1.A1_at11/114+19877802..19879256Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os04g33160OsAffx.26301.1.S1_at1/114+19880418..19880816hypothetical protein
LOC_Os04g33160OsAffx.14433.1.S1_at1/114+19880418..19880816hypothetical protein
LOC_Os04g33170OsAffx.26302.1.S1_at11/114+19885521..19885904hypothetical protein
LOC_Os04g33180OsAffx.14106.1.S1_at3/114+19886819..19887061hypothetical protein
LOC_Os04g33190Os.7877.1.S1_at11/114+19890383..19895680Acetyl-coenzyme A synthetase 2, putative, expressed
LOC_Os04g33200Os.9388.1.S1_at10/114+19896521..19904245expressed protein
LOC_Os04g33210OsAffx.14107.1.S1_at11/114+19907017..19912334ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os04g33220Os.9140.1.S1_at11/114+19912770..19915614SAM domain family protein, expressed
LOC_Os04g33230OsAffx.26303.1.S1_at10/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.31040.1.S1_at3/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_x_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33240Os.49410.1.A1_at6/114+19922182..19923346oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9388.1.S1_at--1006--7571Chr04:19897391..19897414 (24 bp)
GGGCATGTAATCGTACATTTCCAGA
LOC_Os04g33200
Os.9388.1.S1_at--45--8971Chr04:19897248..19897272 (25 bp)
TGAAATGGCTAATCCCCTCCTTCAG
LOC_Os04g33200
Os.9388.1.S1_at--992--4831Chr04:19897220..19897244 (25 bp)
GCTAATCCTTGCGTTCTCATTGGAC
LOC_Os04g33200
Os.9388.1.S1_at--747--4631NONE
GCGTTCTCATTGGACTTCTTTGGAA
NONE
Os.9388.1.S1_at--775--8971Chr04:19897093..19897117 (25 bp)
TGAACAAGCCACTGTACACCGTGAG
LOC_Os04g33200
Os.9388.1.S1_at--51--8811Chr04:19897033..19897057 (25 bp)
TGTTCGCCGGAATCTACGCGCTGGT
LOC_Os04g33200
Os.9388.1.S1_at--911--8831Chr04:19896946..19896970 (25 bp)
TGATCTACGTCCTGATCGCGTGCAA
LOC_Os04g33200
Os.9388.1.S1_at--101--3291Chr04:19896660..19896684 (25 bp)
CAAACGAGACATGTGCAGGCCTAGT
LOC_Os04g33200
Os.9388.1.S1_at--408--8691Chr04:19896649..19896673 (25 bp)
TGTGCAGGCCTAGTTTTGCTACAGG
LOC_Os04g33200
Os.9388.1.S1_at--718--2131Chr04:19896609..19896633 (25 bp)
ACAGATTCGTTCTCTCTGAGAGCTC
LOC_Os04g33200
Os.9388.1.S1_at--583--2591Chr04:19896568..19896592 (25 bp)
AACGAGCCTGTGTATATCATGACAA
LOC_Os04g33200
Target Sequence 
GGGCATGTAATCGTACATTTCCAGAAACACAAGGAGAGAATCATGAAATGGCTAATCCCCTCCTTCAGCANGCTAATCCT
TGCGTTCTCATTGGACTTCTTTGGAATGCATATGAACAAGCCACTGTACACCGTGAGCTACGCCCTCGCCACCGCCGGCG
CCGCGGGCCTCCTGTTCGCCGGAATCTACGCGCTGGTCGACATGTACGGCCACCGGCGGCCGACCGCCGTCATGGAGTGG
ATGGGGACGCACGCGCTCATGATCTACGTCCTGATCGCGTGCAACATCCTGCCCATCTTCATCCACGGCTTNTACTGGAG
GGAGCCCAAGAACAACCTTTTGAGGTTAATCGGAGTTGGGGCATGATCCATGGATGCAGCAGCTAGAAGCCTAGAAGGCA
CGTATAGAGGCGTATTTAGGACACTATTTGGACAGAGACAAACGAGACATGTGCAGGCCTAGTTTTGCTACAGGNTTAGT
TATTNTTGCACAGATTCGTTCTCTCTGAGAGCTCTTTGTATATGGTAAACAACGAGCCTGTGTATATCATGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis