Browse Element(s) Details


Os.9140.1.S1_at

Description gb:CA763614
DB_XREF= gi:25807653
DB_XREF=BR060006B20B03.ab1
CLONE=BR060006B20B03.ab1
TID=Os.9140.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9140 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197853.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3322011/11SAM domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33190Os.7877.1.S1_at11/114+19890383..19895680Acetyl-coenzyme A synthetase 2, putative, expressed
LOC_Os04g33200Os.9388.1.S1_at10/114+19896521..19904245expressed protein
LOC_Os04g33210OsAffx.14107.1.S1_at11/114+19907017..19912334ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os04g33220Os.9140.1.S1_at11/114+19912770..19915614SAM domain family protein, expressed
LOC_Os04g33230OsAffx.26303.1.S1_at10/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.31040.1.S1_at3/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_x_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33240Os.49410.1.A1_at6/114+19922182..19923346oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9140.1.S1_at--75--5331Chr04:19913468..19913492 (25 bp)
GAAGGGTCTTCTTACTGATCAAACA
LOC_Os04g33220
Os.9140.1.S1_at--863--71Chr04:19913448..19913468 (21 bp)
ATTGCCCCTACTCAATGACAGTGCA
LOC_Os04g33220
Os.9140.1.S1_at--185--1411Chr04:19913224..19913248 (25 bp)
AGACTTCTCATCCTTGATCACATTC
LOC_Os04g33220
Os.9140.1.S1_at--95--6451Chr04:19913126..19913233 (25 bp)
GATCACATTCAAAGAGACCCTGAGT
LOC_Os04g33220
Os.9140.1.S1_at--186--2051Chr04:19913090..19913114 (25 bp)
ACTTAAATCGATTGCCACAGCCTGT
LOC_Os04g33220
Os.9140.1.S1_at--449--10871Chr04:19913066..19913090 (25 bp)
TTGGCACCAGCTTTTCCTCAAGTTG
LOC_Os04g33220
Os.9140.1.S1_at--271--6491Chr04:19912965..19912989 (25 bp)
GATAGCTCATAGACGTTTTTGTAGT
LOC_Os04g33220
Os.9140.1.S1_at--179--6511Chr04:19912912..19912936 (25 bp)
GATATGCACTGAAGTTACCCTCGAA
LOC_Os04g33220
Os.9140.1.S1_at--416--9951Chr04:19912897..19912921 (25 bp)
TACCCTCGAATTACTAGCTTCCTGT
LOC_Os04g33220
Os.9140.1.S1_at--647--1551Chr04:19912882..19912906 (25 bp)
AGCTTCCTGTTTTTAGTCTTGAACG
LOC_Os04g33220
Os.9140.1.S1_at--1016--5451Chr04:19912862..19912886 (25 bp)
GAACGGTTGAATCTTATGCTGAGTG
LOC_Os04g33220
Target Sequence 
GAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCA
GACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTTAAATCGATTGCCACAGCCTGTTGGCA
CCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGA
AGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGTCATCAAACTATGATAAATTTAGATGGATGATATGCACTGA
AGTTACCCTCGAATTACTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAATCTTATGCTGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis