Browse Element(s) Details


Os.51649.1.S1_at

Description gb:AK063263.1
DB_XREF= gi:32973281
TID=Os.51649.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-A10, full insert sequence.
FL= gb:AK063263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3326011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33210OsAffx.14107.1.S1_at11/114+19907017..19912334ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os04g33220Os.9140.1.S1_at11/114+19912770..19915614SAM domain family protein, expressed
LOC_Os04g33230OsAffx.26303.1.S1_at10/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.31040.1.S1_at3/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_x_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33240Os.49410.1.A1_at6/114+19922182..19923346oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative
LOC_Os04g33300OsAffx.14110.1.S1_s_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300OsAffx.14110.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300Os.24773.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33310OsAffx.26304.1.S1_s_at11/114+19956166..19958434expressed protein
LOC_Os04g33310OsAffx.26304.1.S1_x_at11/114+19956166..19958434expressed protein
LOC_Os04g33310Os.37710.1.S1_at11/114+19956166..19958434expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51649.1.S1_at--601--5772Chr09:14092027..14092050 (24 bp)
GACGAGTACGAGTCCACCCAGCAGC
NONE
Os.51649.1.S1_at--693--5911Chr04:19933373..19933397 (25 bp)
GAGCTAGCCATCCAACATGCAACAA
LOC_Os04g33260
Os.51649.1.S1_at--1103--5111Chr04:19933340..19933364 (25 bp)
GCACACAAGTCACATCCGGCATGGT
LOC_Os04g33260
Os.51649.1.S1_at--113--811Chr04:19933320..19933344 (25 bp)
ATGGTCGGTCGATGGCCACCCGAAC
LOC_Os04g33260
Os.51649.1.S1_at--552--4111Chr04:19933300..19933324 (25 bp)
CGAACTACACTCCTCCATAATTTCT
LOC_Os04g33260
Os.51649.1.S1_at--241--10571Chr04:19933279..19933303 (25 bp)
TTCTTTATTTATTTCGCGCGTGTTG
LOC_Os04g33260
Os.51649.1.S1_at--276--10411Chr04:19933271..19933295 (25 bp)
TTATTTCGCGCGTGTTGTTATGTGA
LOC_Os04g33260
Os.51649.1.S1_at--500--771Chr04:19933252..19933276 (25 bp)
ATGTGATGTCCATGGTTAAACCCTG
LOC_Os04g33260
Os.51649.1.S1_at--401--7891Chr04:19933239..19933263 (25 bp)
GGTTAAACCCTGCTATGATATGAAA
LOC_Os04g33260
Os.51649.1.S1_at--341--6511Chr04:19933223..19933247 (25 bp)
GATATGAAATCAATCGATCTCCAGA
LOC_Os04g33260
Os.51649.1.S1_at--800--6411Chr04:19933208..19933232 (25 bp)
GATCTCCAGATGAACTTGACCTTGA
LOC_Os04g33260
Target Sequence 
GACGAGTACGAGTCCACCCAGCAGCACCGCATCAAGTGCGCCGGGTTCTTCGGCGGTCTCGGCGCCGCGCCGCCGCCCAC
GTCGTCCTCCTACTGGCTGTCCGCTGCCGACGGCGCCACCGCCGCCGCCCCCAGCGCAAGAACCCACGGCGCGCGTAGCC
ACCGGAGCTGGGCGTGGGCGCTGGCGAGCCCGATGCGAGCGCTGAGGCCGACGAGCTCCTCCTCCAGCAAATCCATCATG
GCCGCGCCCCACAACCGCGGCGGCGTCTCCGGCAACGGCGGCATGGCGATGGCCGCGGTGGCGACGAGCTAGCCATCCAA
CATGCAACAAACACCACCGCACACAAGTCACATCCGGCATGGTCGGTCGATGGCCACCCGAACTACACTCCTCCATAATT
TCTTTATTTATTTCGCGCGTGTTGTTATGTGATGTCCATGGTTAAACCCTGCTATGATATGAAATCAATCGATCTCCAGA
TGAACTTGACCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis