Browse Element(s) Details


OsAffx.26304.1.S1_x_at

Description tigr:9632.m03188
TID=OsAffx.26304.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3331011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative
LOC_Os04g33300OsAffx.14110.1.S1_s_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300OsAffx.14110.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300Os.24773.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33310OsAffx.26304.1.S1_s_at11/114+19956166..19958434expressed protein
LOC_Os04g33310OsAffx.26304.1.S1_x_at11/114+19956166..19958434expressed protein
LOC_Os04g33310Os.37710.1.S1_at11/114+19956166..19958434expressed protein
LOC_Os04g33320OsAffx.26305.1.S1_at10/114+19971602..19974059hypothetical protein
LOC_Os04g33390Os.5186.1.S1_at11/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390OsAffx.29486.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390Os.36927.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26304.1.S1_x_at--761--1931Chr04:19957948..19957972 (25 bp)
ACGGAGCCGTGGCACCAGCTGGCGA
LOC_Os04g33310
OsAffx.26304.1.S1_x_at--480--1711Chr04:19957935..19957959 (25 bp)
ACCAGCTGGCGAGGCAGAGGCCCAA
LOC_Os04g33310
OsAffx.26304.1.S1_x_at--414--2771Chr04:19957912..19957936 (25 bp)
AAGACGCAGCCGGACCTGCTCGCCG
LOC_Os04g33310
OsAffx.26304.1.S1_x_at--856--6171Chr04:19957799..19957823 (25 bp)
GAGGACGCCGAGCAAGGTGCTGGTG
LOC_Os04g33310
OsAffx.26304.1.S1_x_at--396--1631Chr04:19957774..19957798 (25 bp)
AGCGTGGCGGTGCAGCGGAGCCTGT
LOC_Os04g33310
OsAffx.26304.1.S1_x_at--487--7551Chr04:19957751..19957775 (25 bp)
GTGGCCGCTGCACGTCATGGCGTCG
LOC_Os04g33310
OsAffx.26304.1.S1_x_at--971--4571Chr04:19957687..19957711 (25 bp)
GCGCTCTACGTCAAGGAAGGCCGGC
LOC_Os04g33310
OsAffx.26304.1.S1_x_at--815--9531Chr04:19957683..19957707 (25 bp)
TCTACGTCAAGGAAGGCCGGCGGCC
LOC_Os04g33310
OsAffx.26304.1.S1_x_at--237--3331Chr04:19957621..19957645 (25 bp)
CACTACTCCCAGTTCAGCTTAGAGA
LOC_Os04g33310
OsAffx.26304.1.S1_x_at--717--6071Chr04:19957598..19957622 (25 bp)
GAGTAAGTGCGCGTTCTAACTGGAT
LOC_Os04g33310
OsAffx.26304.1.S1_x_at--285--4552Chr11:26323432..26323920 (25 bp)
GCGCGTTCTAACTGGATAATTTGAT
NONE
Target Sequence 
ACGGAGCCGTGGCACCAGCTGGCGAGGCAGAGGCCCAAGACGCAGCCGGACCTGCTCGCCGGCGTGAGGGGGAGGGCGAC
GGCGGCGAGCTTCGGCCCCGCCGCGGCCGCCGGCGGCGGCGAGCAGCTGGAGCCGGAGGCCGCCGGGAGGAGGACGCCGA
GCAAGGTGCTGGTGAGCGTGGCGGTGCAGCGGAGCCTGTGGCCGCTGCACGTCATGGCGTCGGCGGCGTGGAGCGTGGCC
GACCTGGTGGCCGCCGCCGTCGCGCTCTACGTCAAGGAAGGCCGGCGGCCGCCGCTGCCGTCCGCCGACCCGTCGGACTT
CGGCCTCCACTACTCCCAGTTCAGCTTAGAGAGTAAGTGCGCGTTCTAACTGGATAATTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26304.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis