Browse Element(s) Details


Os.37710.1.S1_at

Description gb:AK066299.1
DB_XREF= gi:32976317
TID=Os.37710.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059M19, full insert sequence.
FL= gb:AK066299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3331011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative
LOC_Os04g33300OsAffx.14110.1.S1_s_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300OsAffx.14110.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300Os.24773.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33310OsAffx.26304.1.S1_s_at11/114+19956166..19958434expressed protein
LOC_Os04g33310OsAffx.26304.1.S1_x_at11/114+19956166..19958434expressed protein
LOC_Os04g33310Os.37710.1.S1_at11/114+19956166..19958434expressed protein
LOC_Os04g33320OsAffx.26305.1.S1_at10/114+19971602..19974059hypothetical protein
LOC_Os04g33390Os.5186.1.S1_at11/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390OsAffx.29486.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390Os.36927.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37710.1.S1_at--626--1011Chr04:19956902..19956926 (25 bp)
AGGTTCATCTAGTTCTTTCACTGAA
LOC_Os04g33310
Os.37710.1.S1_at--91--131Chr04:19956878..19956902 (25 bp)
ATTAATGTGCTTCTGTCTTAAGTTC
LOC_Os04g33310
Os.37710.1.S1_at--466--2811Chr04:19956859..19956883 (25 bp)
AAGTTCTAATCCACCATTGATCCGG
LOC_Os04g33310
Os.37710.1.S1_at--1065--6451Chr04:19956833..19956857 (25 bp)
GATAAATCTTTACGGTTGCTTAGGT
LOC_Os04g33310
Os.37710.1.S1_at--655--9151Chr04:19956757..19956781 (25 bp)
TGCCCAAAATCTTCAGCTGCTGTTC
LOC_Os04g33310
Os.37710.1.S1_at--390--3391Chr04:19956651..19956675 (25 bp)
CAGCGCCGGCTTGGGTGAGCTACAT
LOC_Os04g33310
Os.37710.1.S1_at--822--7711Chr04:19956639..19956663 (25 bp)
GGGTGAGCTACATGCAGTTCTGGCC
LOC_Os04g33310
Os.37710.1.S1_at--622--1231Chr04:19956624..19956648 (25 bp)
AGTTCTGGCCCATGATGTAGAGGTA
LOC_Os04g33310
Os.37710.1.S1_at--1153--6871Chr04:19956568..19956592 (25 bp)
GTATTTGTATCCTAGACTGTTCAGA
LOC_Os04g33310
Os.37710.1.S1_at--44--8771Chr04:19956535..19956559 (25 bp)
TGTTCCCCGGTGTGTGTTTGTACAA
LOC_Os04g33310
Os.37710.1.S1_at--897--10731Chr04:19956457..19956481 (25 bp)
TTGAAAATTACCGATGGCCCAGATG
LOC_Os04g33310
Target Sequence 
AGGTTCATCTAGTTCTTTCACTGAATTAATGTGCTTCTGTCTTAAGTTCTAATCCACCATTGATCCGGTGATAAATCTTT
ACGGTTGCTTAGGTTTGGACCCAAGGGAAAAGGTGATGGAACTGGGTTCCAGGAGCTTCTTCCTCTGCCCAAAATCTTCA
GCTGCTGTTCATGCTCCATCACCTTCCTGCTCCTCTGATGAAGCAAGCAGGATCAGGGATAGGGATGCTCCTGCAGCTGC
AAGAGCAGGCGCAGCGCCGGCTTGGGTGAGCTACATGCAGTTCTGGCCCATGATGTAGAGGTAGCTGGTAGCTACNTCTC
GTATACAGACATATGTATTTGTATCCTAGACTGTTCAGAATAGTTCATGTTCCCCGGTGTGTGTTTGTACAATAGTAGCT
CTGTGGATTCAAGAATCAAGAACAGGGTCAGAATTTCTGATGTATTTGAAAATTACCGATGGCCCAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis