Browse Element(s) Details


Os.24773.1.S1_at

Description gb:AK108757.1
DB_XREF= gi:32993966
TID=Os.24773.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G02, full insert sequence.
FL= gb:AK108757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3330011/11Uridylate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative
LOC_Os04g33300OsAffx.14110.1.S1_s_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300OsAffx.14110.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300Os.24773.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33310OsAffx.26304.1.S1_s_at11/114+19956166..19958434expressed protein
LOC_Os04g33310OsAffx.26304.1.S1_x_at11/114+19956166..19958434expressed protein
LOC_Os04g33310Os.37710.1.S1_at11/114+19956166..19958434expressed protein
LOC_Os04g33320OsAffx.26305.1.S1_at10/114+19971602..19974059hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006221biological_processpyrimidine nucleotide biosynthesis
GO:0008652biological_processamino acid biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0009041molecular_functionuridylate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24773.1.S1_at--276--1991Chr04:19954009..19954033 (25 bp)
ACTTTAAGAAGGTTAGCTGCGGTAG
LOC_Os04g33300
Os.24773.1.S1_at--1159--1451Chr04:19954015..19954039 (25 bp)
AGAAGGTTAGCTGCGGTAGAGCATT
LOC_Os04g33300
Os.24773.1.S1_at--583--4071Chr04:19954094..19954118 (25 bp)
CGAGAGCGGGCATGTTCCTTGGACA
LOC_Os04g33300
Os.24773.1.S1_at--114--5891Chr04:19954097..19954121 (25 bp)
GAGCGGGCATGTTCCTTGGACAGAA
LOC_Os04g33300
Os.24773.1.S1_at--978--10851Chr04:19954112..19954136 (25 bp)
TTGGACAGAAGGCTCCCACCTTGAT
LOC_Os04g33300
Os.24773.1.S1_at--1025--2931Chr04:19954120..19954144 (25 bp)
AAGGCTCCCACCTTGATTTGTCTGG
LOC_Os04g33300
Os.24773.1.S1_at--518--3371Chr04:19954128..19954152 (25 bp)
CACCTTGATTTGTCTGGGATGCTTG
LOC_Os04g33300
Os.24773.1.S1_at--750--8671Chr04:19954154..19954178 (25 bp)
TGTGTACTATCTGTTCAGTGCCAAT
LOC_Os04g33300
Os.24773.1.S1_at--940--10151Chr04:19954161..19954185 (25 bp)
TATCTGTTCAGTGCCAATTCTCTAC
LOC_Os04g33300
Os.24773.1.S1_at--677--8791Chr04:19954165..19954189 (25 bp)
TGTTCAGTGCCAATTCTCTACAACG
LOC_Os04g33300
Os.24773.1.S1_at--211--2931Chr04:19954315..19954339 (25 bp)
AAGGCTGTTGTTGAAGTTTAGTGTT
LOC_Os04g33300
Target Sequence 
ACTTTAAGAAGGTTAGCTGCGGTAGAGCATTGGGTCNTGCCCGTACTATGGGGGTAGCCTGCATATTGGTTGATTTTTGT
GGATGCGAGAGCGGGCATGTTCCTTGGACAGAAGGCTCCCACCTTGATTTGTCTGGGATGCTTGNTGTGTACTATCTGTT
CAGTGCCAATTCTCTACAACGNAGGAGAAAAAAAATTGNAGTATCCATTTGTAATGNGATATGTAGATTANATTAGTTTG
ATGGGCATGNATCCTTGNATAAATNGGTTCACGGGTAACCGCATCAAANGTAGGGCTGTAACCNTGTAAGGCTGTTGTTG
AAGTTTAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis