Browse Element(s) Details


Os.27418.1.S1_at

Description gb:CB672034
DB_XREF= gi:29675759
DB_XREF=OSJNEe05N23.r
CLONE=OSJNEe05N23
TID=Os.27418.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27418 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g332604/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33210OsAffx.14107.1.S1_at11/114+19907017..19912334ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os04g33220Os.9140.1.S1_at11/114+19912770..19915614SAM domain family protein, expressed
LOC_Os04g33230OsAffx.26303.1.S1_at10/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.31040.1.S1_at3/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_x_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33240Os.49410.1.A1_at6/114+19922182..19923346oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative
LOC_Os04g33300OsAffx.14110.1.S1_s_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300OsAffx.14110.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300Os.24773.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33310OsAffx.26304.1.S1_s_at11/114+19956166..19958434expressed protein
LOC_Os04g33310OsAffx.26304.1.S1_x_at11/114+19956166..19958434expressed protein
LOC_Os04g33310Os.37710.1.S1_at11/114+19956166..19958434expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27418.1.S1_at--34--10392Chr12:3616033..3616057 (25 bp)
TTTTCTTTTTGGATCGCAACATTCA
NONE
Os.27418.1.S1_at--252--6791Chr04:19930309..19930333 (25 bp)
GTTATTCCATCTTTAGTTCCGAAGG
LOC_Os04g33260
Os.27418.1.S1_at--349--7931Chr04:19929928..19929952 (25 bp)
GGATTCTTCATTCTTTCCTATGGCA
LOC_Os04g33260
Os.27418.1.S1_at--196--9251Chr04:19929913..19929937 (25 bp)
TCCTATGGCATGTGTGCTGGCTACA
LOC_Os04g33260
Os.27418.1.S1_at--856--6391Chr04:19929852..19929876 (25 bp)
GATCTGTCTTTCAACTCAACGTCAC
NONE
Os.27418.1.S1_at--223--1312Chr12:3616675..3616699 (25 bp)
AGATGGAATCAAGCTACCTAGGTTA
NONE
Os.27418.1.S1_at--554--5932Chr12:3616710..3616734 (25 bp)
GAGCATAGATAGTCCATTGTTCATC
NONE
Os.27418.1.S1_at--217--6752Chr12:3616728..3616752 (25 bp)
GTTCATCATAGACTTGCAGCCAATC
NONE
Os.27418.1.S1_at--469--5691Chr04:19929730..19929754 (25 bp)
GACTTGCAGCCAATCACCTGTATAT
NONE
Os.27418.1.S1_at--234--7052Chr12:3616793..3616816 (24 bp)
GTAAAATCATGTCACCTCCATGTTT
NONE
Os.27418.1.S1_at--253--3812Chr12:3616807..3616831 (25 bp)
CTCCATGTTTTTTCTACTTAGGTAT
NONE
Target Sequence 
TTTTCTTTTTGGATCGCAACATTCAAATGTGCTAACTGCTAAGTTATGTCTTGATACAAATGTTGCAGCTTGATGATTGT
GATGACAGCTATGCAAAATTACTGACAAGTTCATCAGACTTTACATTAAAATCATACAATATCNTACGGCTCNTGCACAT
GTTATTCCATCTTTAGTTCCGAAGGATAGNTATGGATTCTTCATTCTTTCCTATGGCATGTGTGCTGGCTACATATTGAT
GTCAGTGATGATGAGTTTGCAAGAAATNTGATCTGTCTTTCAACTCAACGTCACATAGTAAGAGAGTCAATNCTGGTAAT
AAAATCATAGATGGAATCAAGCTACCTAGGTTANCAGCCAATTGAGCATAGATAGTCCATTGTTCATCATAGACTTGCAG
CCAATCACCTGTATATATCATACTTTGTCANGTTTGTACTTCCAAGTAAAATCATGTCACCTCCATGTTTTTTCTACTTA
GGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis