Browse Element(s) Details


OsAffx.14110.1.S1_s_at

Description tigr:9632.m03186
TID=OsAffx.14110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Uridylate kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3330011/11Uridylate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative
LOC_Os04g33300OsAffx.14110.1.S1_s_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300OsAffx.14110.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300Os.24773.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33310OsAffx.26304.1.S1_s_at11/114+19956166..19958434expressed protein
LOC_Os04g33310OsAffx.26304.1.S1_x_at11/114+19956166..19958434expressed protein
LOC_Os04g33310Os.37710.1.S1_at11/114+19956166..19958434expressed protein
LOC_Os04g33320OsAffx.26305.1.S1_at10/114+19971602..19974059hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006221biological_processpyrimidine nucleotide biosynthesis
GO:0008652biological_processamino acid biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0009041molecular_functionuridylate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14110.1.S1_s_at--1084--6991Chr04:19953302..19953326 (25 bp)
GTACTGCTCCAAGCGTCACTAGAAA
LOC_Os04g33300
OsAffx.14110.1.S1_s_at--156--5971Chr04:19953338..19953362 (25 bp)
GAGACACGAGTCCAAACTGCACTGA
LOC_Os04g33300
OsAffx.14110.1.S1_s_at--339--4091Chr04:19953398..19953422 (25 bp)
CGAGCCATACGCCATCTTGAAAAAG
LOC_Os04g33300
OsAffx.14110.1.S1_s_at--52--5311Chr04:19953423..19953447 (25 bp)
GAAGGGTCGTTATCTTTGCTGGTAT
LOC_Os04g33300
OsAffx.14110.1.S1_s_at--89--7791Chr04:19953449..19953473 (25 bp)
GGTGCTGGCATAGGAAATCCACTTT
LOC_Os04g33300
OsAffx.14110.1.S1_s_at--419--3031Chr04:19953464..19953488 (25 bp)
AATCCACTTTTCACCACAGATACAG
LOC_Os04g33300
OsAffx.14110.1.S1_s_at--891--6471Chr04:19953482..19953506 (25 bp)
GATACAGCTGCTGCCTTGAGAGCTT
LOC_Os04g33300
OsAffx.14110.1.S1_s_at--721--8691Chr04:19953659..19953683 (25 bp)
TGTGCTTAAAGGTACCGCCGGAGAT
LOC_Os04g33300
OsAffx.14110.1.S1_s_at--437--5771Chr04:19953684..19953708 (25 bp)
GACGATTATGGTTGTCCTCCTAGGG
LOC_Os04g33300
OsAffx.14110.1.S1_s_at--142--7611Chr04:19953707..19953731 (25 bp)
GGGCAACAACAATCCACCTTTTGAG
LOC_Os04g33300
OsAffx.14110.1.S1_s_at--597--5871Chr04:19953931..19953955 (25 bp)
GAGCCTGGCAATATCTCCAAAGCAA
LOC_Os04g33300
Target Sequence 
GTACTGCTCCAAGCGTCACTAGAAAAGATAGGTGTGGAGACACGAGTCCAAACTGCACTGATGATGCAAGAAGTTGCAGA
GCCATACATAAGGCGACGAGCCATACGCCATCTTGAAAAAGGAAGGGTCGTTATCTTTGCTGGTATTGGTGCTGGCATAG
GAAATCCACTTTTCACCACAGATACAGCTGCTGCCTTGAGAGCTTCTGAAATCAATGCAGATGTTGTGCTTAAAGGTACC
GCCGGAGATGACGATTATGGTTGTCCTCCTAGGGGCAACAACAATCCACCTTTTGAGCACATCTCATTTAGGGAGTTAGC
GGCTAGAGGATTCAGCAGAATGGATATGACAGCGATTACATGTTGTCAGGAAAATAATATTCCTGTTGTCATCTTCAACA
TGTTAGAGCCTGGCAATATCTCCAAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14110.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis