Browse Element(s) Details


OsAffx.14108.1.S1_at

Description tigr:9632.m03181
TID=OsAffx.14108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lob domain protein 12
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3325010/11LOB domain protein 12, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33200Os.9388.1.S1_at10/114+19896521..19904245expressed protein
LOC_Os04g33210OsAffx.14107.1.S1_at11/114+19907017..19912334ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os04g33220Os.9140.1.S1_at11/114+19912770..19915614SAM domain family protein, expressed
LOC_Os04g33230OsAffx.26303.1.S1_at10/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.31040.1.S1_at3/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_x_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33240Os.49410.1.A1_at6/114+19922182..19923346oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative
LOC_Os04g33300OsAffx.14110.1.S1_s_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300OsAffx.14110.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300Os.24773.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14108.1.S1_at--761--491Chr04:19927651..19927675 (25 bp)
ATCGGACAGGGCGAGAACCTCTGCA
LOC_Os04g33250
OsAffx.14108.1.S1_at--623--4351Chr04:19927677..19927701 (25 bp)
CCAGATGCAGCACCGTGATGGCAAC
LOC_Os04g33250
OsAffx.14108.1.S1_at--233--5952Chr07:252806..252832 (23 bp)
GAGAAGAATGGTAGGTTTGCAGCCC
NONE
OsAffx.14108.1.S1_at--1153--5251Chr04:19927992..19928012 (21 bp)
GAATGGTAGGTTTGCAGCCCAGTAC
LOC_Os04g33250
OsAffx.14108.1.S1_at--111--831NONE
ATGGTAGGTTTGCAGCCCAGTACAG
NONE
OsAffx.14108.1.S1_at--594--7851Chr04:19927992..19928016 (25 bp)
GGTAGGTTTGCAGCCCAGTACAGAG
LOC_Os04g33250
OsAffx.14108.1.S1_at--1130--1011Chr04:19927995..19928019 (25 bp)
AGGTTTGCAGCCCAGTACAGAGTAA
LOC_Os04g33250
OsAffx.14108.1.S1_at--350--7871Chr04:19927996..19928020 (25 bp)
GGTTTGCAGCCCAGTACAGAGTAAA
LOC_Os04g33250
OsAffx.14108.1.S1_at--272--10731Chr04:19927999..19928023 (25 bp)
TTGCAGCCCAGTACAGAGTAAACAG
LOC_Os04g33250
OsAffx.14108.1.S1_at--640--4171Chr04:19928005..19928029 (25 bp)
CCCAGTACAGAGTAAACAGGCCTAA
LOC_Os04g33250
OsAffx.14108.1.S1_at--481--7011Chr04:19928009..19928033 (25 bp)
GTACAGAGTAAACAGGCCTAATCTA
LOC_Os04g33250
Target Sequence 
ATCGGACAGGGCGAGAACCTCTGCATCCAGATGCAGCACCGTGATGGCAACGAGAACGAGAAGAATGGTAGGTTTGCAGC
CCAGTACAGAGTAAACAGGCCTAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis