Browse Element(s) Details


Os.49410.1.A1_at

Description gb:AK110700.1
DB_XREF= gi:32995909
TID=Os.49410.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-B08, full insert sequence.
FL= gb:AK110700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g332406/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33200Os.9388.1.S1_at10/114+19896521..19904245expressed protein
LOC_Os04g33210OsAffx.14107.1.S1_at11/114+19907017..19912334ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os04g33220Os.9140.1.S1_at11/114+19912770..19915614SAM domain family protein, expressed
LOC_Os04g33230OsAffx.26303.1.S1_at10/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.31040.1.S1_at3/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_x_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33240Os.49410.1.A1_at6/114+19922182..19923346oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009688biological_processabscisic acid biosynthesis
GO:0010182biological_processsugar mediated signaling
GO:0005829cellular_componentcytosol
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49410.1.A1_at--1115--6391Chr04:19922319..19922343 (25 bp)
GATCGGCTGGCCATGCATTGACAAA
LOC_Os04g33240
Os.49410.1.A1_at--365--8351Chr04:19922315..19922339 (25 bp)
GGCTGGCCATGCATTGACAAAGATC
LOC_Os04g33240
Os.49410.1.A1_at--698--2331Chr04:19922297..19922321 (25 bp)
AAAGATCGATCGACGCTGTCACGTT
LOC_Os04g33240
Os.49410.1.A1_at--97--6391Chr04:19922290..19922314 (25 bp)
GATCGACGCTGTCACGTTAGGCTTG
LOC_Os04g33240
Os.49410.1.A1_at--13--7111Chr04:19922280..19922304 (25 bp)
GTCACGTTAGGCTTGTGTCACGATC
LOC_Os04g33240
Os.49410.1.A1_at--994--911Chr04:19922272..19922296 (25 bp)
AGGCTTGTGTCACGATCGACGCTGT
LOC_Os04g33240
Os.49410.1.A1_at--1108--3351NONE
CACCCTATTACTAGATATAACCCAT
NONE
Os.49410.1.A1_at--586--6511NONE
GATATAACCCATCATAATATTAGGA
NONE
Os.49410.1.A1_at--593--7131NONE
GTCATATTTAGTCCTAGATTCGTTT
NONE
Os.49410.1.A1_at--9--2631NONE
AACCTAGTCCCGGATGTGACACATT
NONE
Os.49410.1.A1_at--337--1151NONE
AGTCCCGGATGTGACACATTTTATT
NONE
Target Sequence 
GATCGGCTGGCCATGCATTGACAAAGATCGATCGACGCTGTCACGTTAGGCTTGTGTCACGATCGACGCTGTCNCAGTTT
ATGTTTGACTTANGTTNTTAATTTTTTTAAAAAATAAATTTTAAAAGGATGGNNGATTAAAATTGAACNCGAAAATTTAT
ATATACGTTTATTATGGGACGGGGAGAGTACTCCCCCCGTCCTAAAAAACCACCCTATTACTAGATATAACCCATCATAA
TATTAGGAATTAGGATATACATATATCCAGATTCATAGTATTAAAATATGTCATATTTAGTCCTAGATTCGTTTTTTATA
GGATGGAAGGAATATTGTTTTTTTCAAGAAACGTGTACTTTTTCCGTCCTATAAAAACCAACCTAGTCCCGGATGTGACA
CATTTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49410.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis