Browse Element(s) Details


OsAffx.14107.1.S1_at

Description tigr:9632.m03177
TID=OsAffx.14107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Clp amino terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3321011/11ERD1 protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33170OsAffx.26302.1.S1_at11/114+19885521..19885904hypothetical protein
LOC_Os04g33180OsAffx.14106.1.S1_at3/114+19886819..19887061hypothetical protein
LOC_Os04g33190Os.7877.1.S1_at11/114+19890383..19895680Acetyl-coenzyme A synthetase 2, putative, expressed
LOC_Os04g33200Os.9388.1.S1_at10/114+19896521..19904245expressed protein
LOC_Os04g33210OsAffx.14107.1.S1_at11/114+19907017..19912334ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os04g33220Os.9140.1.S1_at11/114+19912770..19915614SAM domain family protein, expressed
LOC_Os04g33230OsAffx.26303.1.S1_at10/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.31040.1.S1_at3/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_x_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33240Os.49410.1.A1_at6/114+19922182..19923346oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009408biological_processresponse to heat
GO:0009658biological_processchloroplast organization and biogenesis
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14107.1.S1_at--888--6611Chr04:19911573..19911597 (25 bp)
GTTGGTTCCACATCAATTTCTAATG
LOC_Os04g33210
OsAffx.14107.1.S1_at--883--10831Chr04:19911730..19911754 (25 bp)
TTGTGTTCCACCCTCTTGAGAAAAC
LOC_Os04g33210
OsAffx.14107.1.S1_at--153--5531Chr04:19911749..19911773 (25 bp)
GAAAACTCAGGCATGTTGCTTTTAT
LOC_Os04g33210
OsAffx.14107.1.S1_at--460--9031Chr04:19911780..19911804 (25 bp)
TGCACTTGCATATTGCCTTGTACTT
LOC_Os04g33210
OsAffx.14107.1.S1_at--600--331Chr04:19912023..19912042 (20 bp)
ATACTATGCTGGCTATTCTCAATAT
LOC_Os04g33210
OsAffx.14107.1.S1_at--721--6531Chr04:19912067..19912091 (25 bp)
GATTTTAGCCCTTGGGATTGGCCTA
LOC_Os04g33210
OsAffx.14107.1.S1_at--607--8431Chr04:19912086..19912110 (25 bp)
GGCCTAGAGGTGTCTGATTCCATGA
LOC_Os04g33210
OsAffx.14107.1.S1_at--625--8831Chr04:19912117..19912141 (25 bp)
TGATTTCTCAGCATGGGTACGACAA
LOC_Os04g33210
OsAffx.14107.1.S1_at--361--1571Chr04:19912143..19912167 (25 bp)
AGCTACGGTGCACGGCCACTAAGAA
LOC_Os04g33210
OsAffx.14107.1.S1_at--849--9771Chr04:19912162..19912186 (25 bp)
TAAGAAGAGCCGTCACTCAGCTGGT
LOC_Os04g33210
OsAffx.14107.1.S1_at--391--7611Chr04:19912266..19912290 (25 bp)
GGGAAACCTTGCTTGAGCCGACTGA
LOC_Os04g33210
Target Sequence 
GTTGGTTCCACATCAATTTCTAATGGAAAGAGGAGCATAGGTTTCCAGACACAAACTGATACTGAAGAAAAGTCATATGC
TGCAATGAAATCTTTGGTAATGGAAGAACTGAAGGCATTTTTCCGTCCCGAATTGCTCAATAGAATTGATGAAGTGGTTG
TGTTCCACCCTCTTGAGAAAACTCAGGCATGTTGCTTTTATAGATACTGCACTTGCATATTGCCTTGTACTTTTGTTAAT
ACTATGCTGGCTATTCTCAATATAATGCTGCAAGAGGTGAAGGGTAGGATTTTAGCCCTTGGGATTGGCCTAGAGGTGTC
TGATTCCATGAAGGACCTGATTTCTCAGCATGGGTACGACAAGAGCTACGGTGCACGGCCACTAAGAAGAGCCGTCACTC
AGCTGGTTGAGGATGTTATCAGCGAAGCAATTCTGTCTGGTCAGTTCAAGCCTGGTGACACCATAATGGTGGACACTGAT
GCCACGGGGAAACCTTGCTTGAGCCGACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis