Browse Element(s) Details


Os.7877.1.S1_at

Description gb:CB634244
DB_XREF= gi:29629233
DB_XREF=OSIIEb13K04.r
CLONE=OSIIEb13K04
TID=Os.7877.1
CNT=51
FEA=EST
TIER=Stack
STK=6
UG=Os.7877 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_198504.1 (A.thaliana) acetyl-CoA synthetase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3319011/11Acetyl-coenzyme A synthetase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33120OsAffx.20100.2.S1_at10/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.2.S1_x_at9/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.1.S1_x_at6/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.3.S1_x_at3/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33130NANA4+19870193..19870909hypothetical protein
LOC_Os04g33140OsAffx.14105.1.S1_at11/114+19874544..19876831hypothetical protein
LOC_Os04g33150Os.46073.1.A1_at11/114+19877802..19879256Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os04g33160OsAffx.26301.1.S1_at1/114+19880418..19880816hypothetical protein
LOC_Os04g33160OsAffx.14433.1.S1_at1/114+19880418..19880816hypothetical protein
LOC_Os04g33170OsAffx.26302.1.S1_at11/114+19885521..19885904hypothetical protein
LOC_Os04g33180OsAffx.14106.1.S1_at3/114+19886819..19887061hypothetical protein
LOC_Os04g33190Os.7877.1.S1_at11/114+19890383..19895680Acetyl-coenzyme A synthetase 2, putative, expressed
LOC_Os04g33200Os.9388.1.S1_at10/114+19896521..19904245expressed protein
LOC_Os04g33210OsAffx.14107.1.S1_at11/114+19907017..19912334ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os04g33220Os.9140.1.S1_at11/114+19912770..19915614SAM domain family protein, expressed
LOC_Os04g33230OsAffx.26303.1.S1_at10/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.31040.1.S1_at3/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_x_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_at1/114+19917687..19921074hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016207molecular_function4-coumarate-CoA ligase activity
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7877.1.S1_at--819--6651Chr04:19894750..19894774 (25 bp)
GTTGAGTCTGCTCTGGTTTCACATC
LOC_Os04g33190
Os.7877.1.S1_at--835--7871Chr04:19894764..19894788 (25 bp)
GGTTTCACATCCAAAATGCGCCGAG
LOC_Os04g33190
Os.7877.1.S1_at--188--891Chr04:19894930..19894954 (25 bp)
AGGCCAGGGAATTTACGCTTTCGTG
LOC_Os04g33190
Os.7877.1.S1_at--42--10471Chr04:19894942..19894966 (25 bp)
TTACGCTTTCGTGACATTGGTGGAC
LOC_Os04g33190
Os.7877.1.S1_at--687--8111Chr04:19894963..19894987 (25 bp)
GGACGGTGTTCCTTACAGCGATGAG
LOC_Os04g33190
Os.7877.1.S1_at--1102--2351Chr04:19894995..19895019 (25 bp)
AAAGCCTCGTTATGACTGTTCGCAG
LOC_Os04g33190
Os.7877.1.S1_at--3--1011Chr04:19895266..19895290 (25 bp)
AGGATCCTGCGGAAGATCGCGTCCA
LOC_Os04g33190
Os.7877.1.S1_at--964--4571Chr04:19895356..19895380 (25 bp)
GCGCTCGCCGATAGCTAGCTTTAGC
LOC_Os04g33190
Os.7877.1.S1_at--950--10331Chr04:19895375..19895399 (25 bp)
TTTAGCTAAAGCCACCGTCGTCTCG
LOC_Os04g33190
Os.7877.1.S1_at--427--2971Chr04:19895510..19895534 (25 bp)
AATGGACTTTTTTATGTGCTGCCGC
LOC_Os04g33190
Os.7877.1.S1_at--915--9171Chr04:19895529..19895553 (25 bp)
TGCCGCGGCTTACGATCGGTGTAAA
LOC_Os04g33190
Target Sequence 
GTTGAGTCTGCTCTGGTTTCACATCCAAAATGCGCCGAGGCCGCTGTTGTTGGAATTGACCATGAGGTTAAAGGCCAGGG
AATTTACGCTTTCGTGACATTGGTGGACGGTGTTCCTTACAGCGATGAGCTACGGAAAAGCCTCGTTATGACTGTTCGCA
GCCAGATTGGGGCGTTCGCGGCGCCGGACAAGATCCACTGGGCGCCGGGGCTCCCGAAGACGCGGAGCGGCAAGATCATG
CGGAGGATCCTGCGGAAGATCGCGTCCAGGCAGCTGGACGAGCTCGGCGACACCAGCACGCTCGCCGAACCAGGNGTCGT
CGACCAGCTCATCGCGCTCGCCGATAGCTAGCTTTAGCTAAAGCCACCGTCGTCTCGTCGCGCGCGAGGAACCTCTGCTC
GGCCGNGAGTCTCATTTTCGTTATGAGCAAGATTACATTCTTATTCCATCAAAAAAAANTATGAATGATTTTTTTATGTG
TCAGAAAAAATGGACTTTTTTATGTGCTGCCGCGGCTTACGATCGGTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis