Browse Element(s) Details


Os.46073.1.A1_at

Description gb:AK112111.1
DB_XREF= gi:37988774
TID=Os.46073.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E01, full insert sequence.
FL= gb:AK112111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3315011/11Desiccation-related protein PCC13-62 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33110Os.26063.1.S1_at2/114+19858879..19861827hypothetical protein
LOC_Os04g33120OsAffx.20100.2.S1_at10/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.2.S1_x_at9/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.1.S1_x_at6/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.3.S1_x_at3/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33130NANA4+19870193..19870909hypothetical protein
LOC_Os04g33140OsAffx.14105.1.S1_at11/114+19874544..19876831hypothetical protein
LOC_Os04g33150Os.46073.1.A1_at11/114+19877802..19879256Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os04g33160OsAffx.26301.1.S1_at1/114+19880418..19880816hypothetical protein
LOC_Os04g33160OsAffx.14433.1.S1_at1/114+19880418..19880816hypothetical protein
LOC_Os04g33170OsAffx.26302.1.S1_at11/114+19885521..19885904hypothetical protein
LOC_Os04g33180OsAffx.14106.1.S1_at3/114+19886819..19887061hypothetical protein
LOC_Os04g33190Os.7877.1.S1_at11/114+19890383..19895680Acetyl-coenzyme A synthetase 2, putative, expressed
LOC_Os04g33200Os.9388.1.S1_at10/114+19896521..19904245expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46073.1.A1_at--1006--6431Chr04:19878322..19878346 (25 bp)
GATCAGGGCGCTGCTGTACGAGCAC
LOC_Os04g33150
Os.46073.1.A1_at--456--4131Chr04:19878314..19878338 (25 bp)
CGCTGCTGTACGAGCACGGGCTGTC
LOC_Os04g33150
Os.46073.1.A1_at--987--7591Chr04:19878162..19878186 (25 bp)
GGGCAGACCGTGGGCAACATCATCG
LOC_Os04g33150
Os.46073.1.A1_at--927--4411Chr04:19878015..19878039 (25 bp)
GCCAGAGCCTTCATCGCCTAGCAAG
LOC_Os04g33150
Os.46073.1.A1_at--561--1491Chr04:19877996..19878020 (25 bp)
AGCAAGCCGGCCGACCGATGGAAGA
LOC_Os04g33150
Os.46073.1.A1_at--1157--2431Chr04:19877971..19877995 (25 bp)
AAAAGGACATAGATACATCGGAACA
LOC_Os04g33150
Os.46073.1.A1_at--167--251Chr04:19877945..19877969 (25 bp)
ATATAACTCATGTTCTTGCAAGCTG
LOC_Os04g33150
Os.46073.1.A1_at--698--6731Chr04:19877934..19877958 (25 bp)
GTTCTTGCAAGCTGTAGACTATCTA
LOC_Os04g33150
Os.46073.1.A1_at--517--6951Chr04:19877921..19877945 (25 bp)
GTAGACTATCTATACACCTTACATG
LOC_Os04g33150
Os.46073.1.A1_at--356--2171Chr04:19877908..19877932 (25 bp)
ACACCTTACATGTGTGTCAGTGTGT
LOC_Os04g33150
Os.46073.1.A1_at--943--7111Chr04:19877893..19877917 (25 bp)
GTCAGTGTGTGTTTTGTTATAGAAC
LOC_Os04g33150
Target Sequence 
GATCAGGGCGCTGCTGTACGAGCACGGGCTGTCGCGGGTGGCGAGCTACGGCGTCGGGGTGGCGGAGCTCACGGCGCACA
TCTCCGAGCTGCGGAACGTGCTGGGGAGGAAGGGGGTCAAGGACGAGGGGCTGGTGGTGGCGCCGGGGCAGGGGCCGGAG
GGGCAGACCGTGGGCAACATCATCGCCGGCGACCGCTTCTCGCTCGCCTACGACCGCACGCCCGAGGAGATCCTCGGCGT
CGTGTACNGGCTCCGGCGACCCCGCCAAGGCCGGCGGGTTCTTCCCCCAGGGCGCCGACGGCCGCATCGCCAGAGCCTTC
ATCGCCTAGCAAGCCGGCCGACCGATGGAAGAAAAAGGACATAGATACATCGGAACANATATAACTCATGTTCTTGCAAG
CTGTAGACTATCTATACACCTTACATGTGTGTCAGTGTGTGTTTTGTTATAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46073.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis