Browse Element(s) Details


Os.12197.1.S1_x_at

Description gb:AB110172.1
DB_XREF= gi:32352141
TID=Os.12197.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPB022
DEF=Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPB022.
FL= gb:AK062176.1 gb:AB110172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2301011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22950Os.47768.1.S1_at11/113+13237080..13239471Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g22960OsAffx.25199.1.S1_at11/113+13242011..13243186expressed protein
LOC_Os03g22970Os.2987.3.S1_x_at3/113+13244334..13248447transposon protein, putative, unclassified
LOC_Os03g22980NANA3+13249024..13250446retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g22990Os.57404.1.S1_at11/113+13251612..13254083F-box domain containing protein, expressed
LOC_Os03g23000Os.56029.1.S1_at1/113+13255009..13255245hypothetical protein
LOC_Os03g23010Os.12197.1.S1_x_at11/113+13262025..13263348expressed protein
LOC_Os03g23010Os.12197.2.S1_a_at11/113+13262025..13263348expressed protein
LOC_Os03g23020Os.49518.1.S1_at11/113+13268172..13270294expressed protein
LOC_Os03g23030OsAffx.12996.1.S1_at10/113+13272788..13288554aberrant pollen transmission 1, putative, expressed
LOC_Os03g23030Os.52128.1.S1_at2/113+13272788..13288554aberrant pollen transmission 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009617biological_processresponse to bacteria
GO:0009644biological_processresponse to high light intensity
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12197.1.S1_x_at--945--4811Chr03:13262689..13262821 (25 bp)
GCTCTCAAGACTGATGCGGTGCTCA
LOC_Os03g23010
Os.12197.1.S1_x_at--133--2771Chr03:13262695..13262827 (25 bp)
AAGACTGATGCGGTGCTCAAGGCGC
LOC_Os03g23010
Os.12197.1.S1_x_at--463--4291Chr03:13262956..13262980 (25 bp)
CCTCGCTAGGCTGCGATGGCTAGGA
LOC_Os03g23010
Os.12197.1.S1_x_at--797--7991Chr03:13262995..13263019 (25 bp)
GGATGTAGCAAAAGCATTGCGTCTT
LOC_Os03g23010
Os.12197.1.S1_x_at--772--2431Chr03:13263004..13263028 (25 bp)
AAAAGCATTGCGTCTTTGCGCCGCG
LOC_Os03g23010
Os.12197.1.S1_x_at--183--1551Chr03:13263007..13263031 (25 bp)
AGCATTGCGTCTTTGCGCCGCGGTG
LOC_Os03g23010
Os.12197.1.S1_x_at--62--10271Chr03:13263018..13263042 (25 bp)
TTTGCGCCGCGGTGTTTTGCTTTGC
LOC_Os03g23010
Os.12197.1.S1_x_at--1033--1732Chr03:13263182..13263206 (25 bp)
ACCTTTGTTCAGTGTTGCCTTGTAA
LOC_Os03g23010
Os.12197.1.S1_x_at--958--1091Chr03:13263273..13263297 (25 bp)
AGTGTGCACTCCTGTTAATGTTCTG
LOC_Os03g23010
Os.12197.1.S1_x_at--387--5111Chr03:13263278..13263302 (25 bp)
GCACTCCTGTTAATGTTCTGATGAT
LOC_Os03g23010
Os.12197.1.S1_x_at--25--6271Chr03:13263300..13263324 (25 bp)
GATGTGCAATAGCAAGCAGCCTAAT
LOC_Os03g23010
Target Sequence 
GCTCTCAAGACTGATGCGGTGCTCAAGGCGCTGAGCCTGGTGTCTCCCAAGGGCGGCGACGCGCCGCGGGGGCTCCGGGA
GAAGCCCCGGCACTCCGAGAAGCCCACCAAGTACGCCGGCAGCCCGAGGAGCGGCGGCGCTCCCCGCGTCATCCACCAGC
CTCGCTAGGCTGCGATGGCTAGGATGGCAAAAACTAAAGGATGTAGCAAAAGCATTGCGTCTTTGCGCCGCGGTGTTTTG
CTTTGCTTCCTTCCTCCCGGCTGCTGCTGCTGGTGTGGTCTACTCAAAGTCTGGGTTTGTCCCTAGAGTTTATCTAGGAA
TTTAGTTGTGTCCTTTTGTATAGTATAAACCAAAATGACCCTAAAAAAAGTATGAACAAAATGCAACCTTTGTTCAGTGT
TGCCTTGTAAGTTTAATGTTCATCTAGAGTTCGTCTAGGAAAATTCCAAAAAGAAGAAGTGGAAGAAGAATGTAGTAGTG
TGCACTCCTGTTAATGTTCTGATGATGTGCAATAGCAAGCAGCCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12197.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis