Browse Element(s) Details


Os.12223.2.S1_at

Description gb:AK071347.1
DB_XREF= gi:32981370
TID=Os.12223.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0011P19.5 (OSJNBa0011P19.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095C13, full insert sequence.
FL= gb:AK071347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g534106/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53380NANA3+30575593..30576692hypothetical protein
LOC_Os03g53390OsAffx.3602.1.S1_at11/113+30583281..30586758expressed protein
LOC_Os03g53390Os.6727.1.S1_at1/113+30583281..30586758expressed protein
LOC_Os03g53400OsAffx.13479.1.S1_at11/113+30589588..30590374Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g53410OsAffx.25701.1.S1_at11/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53410Os.12223.2.S1_at6/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53410Os.46332.1.A1_at1/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53419OsAffx.16630.1.S1_at1/113+30595929..30596609hypothetical protein
LOC_Os03g53430OsAffx.20729.1.S1_x_at3/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53430OsAffx.1674.1.S1_at1/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53440NANA3+30610275..30611063hypothetical protein
LOC_Os03g53450OsAffx.25702.1.S1_at11/113+30612242..30613469hypothetical protein
LOC_Os03g53470OsAffx.25703.1.S1_x_at4/113+30615632..30616012hypothetical protein
LOC_Os03g53480OsAffx.13481.2.S1_at11/113+30617076..30619258hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12223.2.S1_at--369--5611NONE
GACAAGTACCTCGATCCGATCCGTT
NONE
Os.12223.2.S1_at--868--531Chr03:30595429..30595453 (25 bp)
ATCCGATCCGTTACCTGATTTTCTT
LOC_Os03g53410
Os.12223.2.S1_at--122--9971Chr03:30595440..30595464 (25 bp)
TACCTGATTTTCTTCCGGGATTGAT
LOC_Os03g53410
Os.12223.2.S1_at--916--8491Chr03:30595474..30595498 (25 bp)
TGGCTTGAAACTATGCCTGATCTCA
LOC_Os03g53410
Os.12223.2.S1_at--352--4471Chr03:30595488..30595512 (25 bp)
GCCTGATCTCAGTGATGTTGTTGTC
LOC_Os03g53410
Os.12223.2.S1_at--949--7391Chr03:30595499..30595523 (25 bp)
GTGATGTTGTTGTCAGCTTTAGCTT
LOC_Os03g53410
Os.12223.2.S1_at--1079--3391Chr03:30595512..30595536 (25 bp)
CAGCTTTAGCTTTGGTATGCAGGAT
LOC_Os03g53410
Os.12223.2.S1_at--936--3471Chr03:30595531..30595555 (25 bp)
CAGGATGTTACCTCGTTGTGAACTT
NONE
Os.12223.2.S1_at--861--2511Chr03:30595551..30595575 (25 bp)
AACTTGTGAGGAGTTCGTTCATCTC
NONE
Os.12223.2.S1_at--354--6171Chr03:30595558..30595582 (25 bp)
GAGGAGTTCGTTCATCTCTATTGCC
NONE
Os.12223.2.S1_at--201--10531Chr03:30595568..30595592 (25 bp)
TTCATCTCTATTGCCTGGGTCTACA
NONE
Target Sequence 
GACAAGTACCTCGATCCGATCCGTTACCTGATTTTCTTCCGGGATTGATGTGTGTTGTTGGCTTGAAACTATGCCTGATC
TCAGTGATGTTGTTGTCAGCTTTAGCTTTGGTATGCAGGATGTTACCTCGTTGTGAACTTGTGAGGAGTTCGTTCATCTC
TATTGCCTGGGTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12223.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis