Browse Element(s) Details


OsAffx.3602.1.S1_at

Description tigr:9631.m05236
TID=OsAffx.3602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5339011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53350NANA3+30560392..30561858Cytokinin-O-glucosyltransferase 1, putative
LOC_Os03g53360Os.6682.1.A1_s_at11/113+30564358..30566565Transferase family protein, expressed
LOC_Os03g53380NANA3+30575593..30576692hypothetical protein
LOC_Os03g53390OsAffx.3602.1.S1_at11/113+30583281..30586758expressed protein
LOC_Os03g53390Os.6727.1.S1_at1/113+30583281..30586758expressed protein
LOC_Os03g53400OsAffx.13479.1.S1_at11/113+30589588..30590374Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g53410OsAffx.25701.1.S1_at11/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53410Os.12223.2.S1_at6/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53410Os.46332.1.A1_at1/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53419OsAffx.16630.1.S1_at1/113+30595929..30596609hypothetical protein
LOC_Os03g53430OsAffx.20729.1.S1_x_at3/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53430OsAffx.1674.1.S1_at1/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53440NANA3+30610275..30611063hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3602.1.S1_at--253--9271Chr03:30584254..30584278 (25 bp)
TCGCGGTCCCCGTGTTGAATAGGAA
LOC_Os03g53390
OsAffx.3602.1.S1_at--899--1331Chr03:30584286..30584310 (25 bp)
AGAGGGATTAGTCCTCATCGCCGAG
LOC_Os03g53390
OsAffx.3602.1.S1_at--866--1651Chr03:30584395..30584419 (25 bp)
AGCGCGCGCGTCAAGGACTAGTACA
LOC_Os03g53390
OsAffx.3602.1.S1_at--593--8211Chr03:30586419..30586443 (25 bp)
GGAATCTAGCAATGCACAACCTCAA
LOC_Os03g53390
OsAffx.3602.1.S1_at--807--2191Chr03:30586434..30586458 (25 bp)
ACAACCTCAAGATTCTGCCTATTCA
LOC_Os03g53390
OsAffx.3602.1.S1_at--968--3531Chr03:30586472..30586496 (25 bp)
CATCCATGACTTGTTGCCGGAAGAG
LOC_Os03g53390
OsAffx.3602.1.S1_at--917--4251Chr03:30586488..30586512 (25 bp)
CCGGAAGAGGACTGATGGCGCTACT
LOC_Os03g53390
OsAffx.3602.1.S1_at--642--8471Chr03:30586503..30586527 (25 bp)
TGGCGCTACTTTCCTCGAAGATCTG
LOC_Os03g53390
OsAffx.3602.1.S1_at--484--1271Chr03:30586620..30586644 (25 bp)
AGATACTGCACTTCTTTGCTCTTTC
LOC_Os03g53390
OsAffx.3602.1.S1_at--621--4951Chr03:30586671..30586695 (25 bp)
GCATTTCTTGTGCTTCATGTTTCGC
LOC_Os03g53390
OsAffx.3602.1.S1_at--953--3651Chr03:30586683..30586707 (25 bp)
CTTCATGTTTCGCATCTCAGATGTT
LOC_Os03g53390
Target Sequence 
TCGCGGTCCCCGTGTTGAATAGGAAGGAATTCAGAGGGATTAGTCCTCATCGCCGAGCGCGCGCGTCAAGGACTAGTACA
GCCAGTTCAAGGAGAACTCCGCCGAGAAAGCACTGGATCTGCATCGAGGACAAGTTCCGCGCCGCCGGCGACTACGTCTC
ACAGAAGAGCAGCTCGGTGTTTGGCAAAAAGAAGGTCGAGCCCATGGTCAAGGATGCAGCAGCTCCAGGGAAGGGCGGGA
GGCTTAAGATGGAATCTAGCAATGCACAACCTCAAGATTCTGCCTATTCAGTTCCCAAAAACCCATCCATGACTTGTTGC
CGGAAGAGGACTGATGGCGCTACTTTCCTCGAAGATCTGAAAGACCATATCGAGGAGTTCATCCATGCCTCCATGGATGA
GCACAAGACATGCTTCAAACACCATCCAAAAGGTCAGATGTGCAAACACTCAGATACTGCACTTCTTTGCTCTTTCTGCA
TTTTGGACATTTTGATGATGAAGCATTTCTTGTGCTTCATGTTTCGCATCTCAGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis