Browse Element(s) Details


OsAffx.25701.1.S1_at

Description tigr:9631.m05238
TID=OsAffx.25701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5341011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53380NANA3+30575593..30576692hypothetical protein
LOC_Os03g53390OsAffx.3602.1.S1_at11/113+30583281..30586758expressed protein
LOC_Os03g53390Os.6727.1.S1_at1/113+30583281..30586758expressed protein
LOC_Os03g53400OsAffx.13479.1.S1_at11/113+30589588..30590374Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g53410OsAffx.25701.1.S1_at11/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53410Os.12223.2.S1_at6/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53410Os.46332.1.A1_at1/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53419OsAffx.16630.1.S1_at1/113+30595929..30596609hypothetical protein
LOC_Os03g53430OsAffx.20729.1.S1_x_at3/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53430OsAffx.1674.1.S1_at1/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53440NANA3+30610275..30611063hypothetical protein
LOC_Os03g53450OsAffx.25702.1.S1_at11/113+30612242..30613469hypothetical protein
LOC_Os03g53470OsAffx.25703.1.S1_x_at4/113+30615632..30616012hypothetical protein
LOC_Os03g53480OsAffx.13481.2.S1_at11/113+30617076..30619258hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25701.1.S1_at--391--9851Chr03:30594628..30594652 (25 bp)
TACAAGCACCGGGACAAGAAGCTGC
LOC_Os03g53410
OsAffx.25701.1.S1_at--259--1451Chr03:30594644..30594668 (25 bp)
AGAAGCTGCCGTACAAGAAGGTGGT
LOC_Os03g53410
OsAffx.25701.1.S1_at--959--1931Chr03:30594821..30594845 (25 bp)
ACGGCGACGACATGACCGGGCAGAC
LOC_Os03g53410
OsAffx.25701.1.S1_at--970--8251Chr03:30594839..30594863 (25 bp)
GGCAGACGGGCACCATCGGGTACAT
LOC_Os03g53410
OsAffx.25701.1.S1_at--742--4451Chr03:30594889..30594913 (25 bp)
GCCTACGACCACAAGTGCGACGTCT
LOC_Os03g53410
OsAffx.25701.1.S1_at--469--8331Chr03:30594922..30594946 (25 bp)
GGCGTCCTCCTCTGGGAGACCTACT
LOC_Os03g53410
OsAffx.25701.1.S1_at--81--8651Chr03:30594934..30594958 (25 bp)
TGGGAGACCTACTGCTGCGCCATGG
LOC_Os03g53410
OsAffx.25701.1.S1_at--133--8951Chr03:30594981..30595005 (25 bp)
TGACATCTCCTACCACGTCGACAAG
LOC_Os03g53410
OsAffx.25701.1.S1_at--749--411Chr03:30595109..30595133 (25 bp)
ATCAGGCCGGACATACCGAGGTGCT
LOC_Os03g53410
OsAffx.25701.1.S1_at--352--1811Chr03:30595179..30595203 (25 bp)
ACCCGGACAACAGGCCGGAGATGTC
LOC_Os03g53410
OsAffx.25701.1.S1_at--891--8531Chr03:30595221..30595245 (25 bp)
TGGAGAAGATCGACACCTCGCGCGG
LOC_Os03g53410
Target Sequence 
TACAAGCACCGGGACAAGAAGCTGCCGTACAAGAAGGTGGTGCAGCTGGCGCTGGACATGGCGAGGGGGCTGCGCTACCT
GCACGGGGAGAAGATCGTGCACCGCGACGTCAAGGCGGAGAACATGCTGCTCGACAGGAAGAAGACGCTCAAGATCGCCG
ACTTCGGCGTGGCGCGCGTGGAGGCCGGCGCCGACGGCGACGACATGACCGGGCAGACGGGCACCATCGGGTACATGGCG
CCCGAGGTGCTCCAGGGCCGCGCCTACGACCACAAGTGCGACGTCTACAGCTTCGGCGTCCTCCTCTGGGAGACCTACTG
CTGCGCCATGGCCTACCCCAACTACAGCCTCGCTGACATCTCCTACCACGTCGACAAGCTGGGGATCAGGCCGGACATAC
CGAGGTGCTGCCCGAAGGCGATGGCGGACATCATGGCGAGGTGCTGGGACGCGAACCCGGACAACAGGCCGGAGATGTCG
GAGGTGGTGGCGCTGCTGGAGAAGATCGACACCTCGCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis