Browse Element(s) Details


Os.12300.1.S1_at

Description gb:AK100654.1
DB_XREF= gi:32985863
TID=Os.12300.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative L-ascorbate oxidase homolog (B1148D12.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111E13, full insert sequence.
FL= gb:AK100654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6008011/11L-ascorbate oxidase homolog precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60040Os.31272.1.S2_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.2.S1_x_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S1_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S2_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60050OsAffx.23866.1.S1_at11/111+35058059..35062051microtubule bundling polypeptide TMBP200, putative
LOC_Os01g60060OsAffx.21650.1.S1_x_at11/111+35065597..35070720Protein kinase domain containing protein, expressed
LOC_Os01g60070OsAffx.23867.1.S1_at11/111+35072467..35072676hypothetical protein
LOC_Os01g60080Os.12300.1.S1_at11/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60080OsAffx.27264.1.S1_s_at2/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60090Os.40360.1.S1_x_at1/111+35079477..35081501hypothetical protein
LOC_Os01g60100NANA1+35082191..35084502hAT family dimerisation domain containing protein
LOC_Os01g60110Os.34196.1.S1_at11/111+35096211..35099217expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12300.1.S1_at--732--9991Chr01:35075803..35075827 (25 bp)
TAGCTGCTGCTGTACACACAAACAA
LOC_Os01g60080
Os.12300.1.S1_at--669--5971Chr01:35075841..35075865 (25 bp)
GAGAGCACGAGTTTTTCCGTTTCCT
LOC_Os01g60080
Os.12300.1.S1_at--372--10411Chr01:35075886..35075910 (25 bp)
TTATTCTTCTTGCTCGGTTTACTTT
LOC_Os01g60080
Os.12300.1.S1_at--1123--8291Chr01:35075947..35075971 (25 bp)
GGCTTCAATTACCTGATGTCGTCAC
LOC_Os01g60080
Os.12300.1.S1_at--928--9351Chr01:35076056..35076080 (25 bp)
TCGAATCGTCGTTGCATGTAGTAGG
LOC_Os01g60080
Os.12300.1.S1_at--973--6071Chr01:35076080..35076104 (25 bp)
GAGTATTGATTCTACCTGATCGTCA
LOC_Os01g60080
Os.12300.1.S1_at--38--7031Chr01:35076171..35076195 (25 bp)
GTACATGAGTATCTCCTCTCGATTG
LOC_Os01g60080
Os.12300.1.S1_at--418--10571Chr01:35076218..35076242 (25 bp)
TTCTATCCTCGATTTTGTTCGGTAC
LOC_Os01g60080
Os.12300.1.S1_at--562--6711Chr01:35076234..35076258 (25 bp)
GTTCGGTACTTCACCTTTGTAAGCT
LOC_Os01g60080
Os.12300.1.S1_at--413--1731Chr01:35076246..35076270 (25 bp)
ACCTTTGTAAGCTGTTGTTCCGATA
LOC_Os01g60080
Os.12300.1.S1_at--25--8011Chr01:35076302..35076326 (25 bp)
GGATGTGCAATTCAGTGTACCTTTT
LOC_Os01g60080
Target Sequence 
TAGCTGCTGCTGTACACACAAACAACGCAGGCGACAGGGAGAGCACGAGTTTTTCCGTTTCCTTTTTTCGTACGTCCCCC
CGTTTATTCTTCTTGCTCGGTTTACTTTCTCTTTCGAGGAATAAAATTGGGCTTCAAGATCGACGGCTTCAATTACCTGA
TGTCGTCACACCGGAACGAGGATGAAAACACAGCAAGGAGAAAGATTGGCCAGCGAGATGCATGGAATGCATACAAAAGC
TCGAGATGCCCTCTCGAATCGTCGTTGCATGTAGTAGGAGTATTGATTCTACCTGATCGTCAATTAATTTATCCCCCAGT
TAATAAGTCCTTCAAACCAATTGATTGTTCTGTGTCTATAATATATATGTACATGAGTATCTCCTCTCGATTGTTTTGAT
GTAATTTTTGGTTATTTCTATCCTCGATTTTGTTCGGTACTTCACCTTTGTAAGCTGTTGTTCCGATAGATGAAAATCAC
AGTAGTATATGAGACATATGGATGTGCAATTCAGTGTACCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis