Browse Element(s) Details


OsAffx.21650.1.S1_x_at

Description gb:NM_191078.1
DB_XREF= gi:34909239
GEN=B1148D12.5
TID=OsAffx.21650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative receptor protein kinase (B1148D12.5), mRNA.
PROD=putative receptor protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6006011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60040Os.31272.1.S2_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.2.S1_x_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S1_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S2_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60050OsAffx.23866.1.S1_at11/111+35058059..35062051microtubule bundling polypeptide TMBP200, putative
LOC_Os01g60060OsAffx.21650.1.S1_x_at11/111+35065597..35070720Protein kinase domain containing protein, expressed
LOC_Os01g60070OsAffx.23867.1.S1_at11/111+35072467..35072676hypothetical protein
LOC_Os01g60080Os.12300.1.S1_at11/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60080OsAffx.27264.1.S1_s_at2/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60090Os.40360.1.S1_x_at1/111+35079477..35081501hypothetical protein
LOC_Os01g60100NANA1+35082191..35084502hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21650.1.S1_x_at--969--7811Chr01:35070065..35070089 (25 bp)
GGTCTTTCAAAGCTGGTATCTGACA
LOC_Os01g60060
OsAffx.21650.1.S1_x_at--979--2871Chr01:35070095..35070119 (25 bp)
AAGGGCCATGTTTCTACCCAAGTGA
LOC_Os01g60060
OsAffx.21650.1.S1_x_at--1--7611Chr01:35070121..35070231 (25 bp)
GGGCACACTGGGTTATTTGGATCCT
LOC_Os01g60060
OsAffx.21650.1.S1_x_at--718--5231Chr01:35070232..35070256 (25 bp)
GAATACTACATGACTCAGCAGCTAT
LOC_Os01g60060
OsAffx.21650.1.S1_x_at--1046--8831Chr01:35070302..35070326 (25 bp)
TGATAACGTCCAGGCAGCCCATAGA
LOC_Os01g60060
OsAffx.21650.1.S1_x_at--241--8751Chr01:35070477..35070501 (25 bp)
TGTAGAGGAGTCTGCTGCTGACCGC
LOC_Os01g60060
OsAffx.21650.1.S1_x_at--917--9111Chr01:35070492..35070516 (25 bp)
TGCTGACCGCCCGACAATGAATGAT
LOC_Os01g60060
OsAffx.21650.1.S1_x_at--1162--3711Chr01:35070565..35070589 (25 bp)
CTAAACTCAGCATCTTTATCGGCTC
LOC_Os01g60060
OsAffx.21650.1.S1_x_at--926--10151Chr01:35070581..35070605 (25 bp)
TATCGGCTCAGCAGTTTGGATATGC
LOC_Os01g60060
OsAffx.21650.1.S1_x_at--675--571Chr01:35070623..35070647 (25 bp)
ATCCTTATGGAGATCATGTGCCTAT
LOC_Os01g60060
OsAffx.21650.1.S1_x_at--704--1511Chr01:35070661..35070685 (25 bp)
AGCAGCAGTGCTTTTGATTACAACA
LOC_Os01g60060
Target Sequence 
GGTCTTTCAAAGCTGGTATCTGACACAAAAAAGGGCCATGTTTCTACCCAAGTGAAGGGCACACTGGGTTATTTGGATCC
TGAATACTACATGACTCAGCAGCTATCTGAGAAGAGTGATGTATATAGCTTTGGAGTTGTCATGCTAGAACTGATAACGT
CCAGGCAGCCCATAGAGAAAGGCACATATATTGTCCGTGAGATCAGGACAGCAATAGATCAGTATGACCAAGAGTATTAC
GGATTGAAGAGCCTAATTGATCCAACAATCCGGGATTCAGCAAAAATGGTTGGCTTTAGGAGATTTGTGCAGTTGGCTAT
GGAATGTGTAGAGGAGTCTGCTGCTGACCGCCCGACAATGAATGATGTGGTGAAGGAACTTGAGATTATAATACAAAATG
AAGGGGCACAGTTGCTAAACTCAGCATCTTTATCGGCTCAGCAGTTTGGATATGCAAAGGGTAGAGATCCAGATCCTTAT
GGAGATCATGTGCCTATCAATGATGACAGCAGCAGCAGTGCTTTTGATTACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21650.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis