Browse Element(s) Details


OsAffx.23867.1.S1_at

Description tigr:9629.m05898
TID=OsAffx.23867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6007011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60040Os.31272.1.S2_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.2.S1_x_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S1_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S2_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60050OsAffx.23866.1.S1_at11/111+35058059..35062051microtubule bundling polypeptide TMBP200, putative
LOC_Os01g60060OsAffx.21650.1.S1_x_at11/111+35065597..35070720Protein kinase domain containing protein, expressed
LOC_Os01g60070OsAffx.23867.1.S1_at11/111+35072467..35072676hypothetical protein
LOC_Os01g60080Os.12300.1.S1_at11/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60080OsAffx.27264.1.S1_s_at2/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60090Os.40360.1.S1_x_at1/111+35079477..35081501hypothetical protein
LOC_Os01g60100NANA1+35082191..35084502hAT family dimerisation domain containing protein
LOC_Os01g60110Os.34196.1.S1_at11/111+35096211..35099217expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23867.1.S1_at--323--7031Chr01:35072499..35072523 (25 bp)
GTACAGCTTTGGGTCTGTCATGCTT
LOC_Os01g60070
OsAffx.23867.1.S1_at--638--3871Chr01:35072513..35072537 (25 bp)
CTGTCATGCTTGAGCTACTAAGCAG
LOC_Os01g60070
OsAffx.23867.1.S1_at--1002--9871Chr01:35072528..35072552 (25 bp)
TACTAAGCAGAAGGCTTCCCCTAGC
LOC_Os01g60070
OsAffx.23867.1.S1_at--810--2931Chr01:35072538..35072562 (25 bp)
AAGGCTTCCCCTAGCGAAGGGCAGA
LOC_Os01g60070
OsAffx.23867.1.S1_at--1012--10651Chr01:35072543..35072567 (25 bp)
TTCCCCTAGCGAAGGGCAGATTTAT
LOC_Os01g60070
OsAffx.23867.1.S1_at--180--5031Chr01:35072558..35072582 (25 bp)
GCAGATTTATTGATCGGGAATTCAG
LOC_Os01g60070
OsAffx.23867.1.S1_at--802--8811Chr01:35072568..35072592 (25 bp)
TGATCGGGAATTCAGGATGGCAATA
LOC_Os01g60070
OsAffx.23867.1.S1_at--1036--9631Chr01:35072579..35072603 (25 bp)
TCAGGATGGCAATAGATGCAAGCAA
LOC_Os01g60070
OsAffx.23867.1.S1_at--1091--9931Chr01:35072605..35072629 (25 bp)
TACGACTACTATGGCCTGCAATGCA
LOC_Os01g60070
OsAffx.23867.1.S1_at--71--5711Chr01:35072608..35072632 (25 bp)
GACTACTATGGCCTGCAATGCATCA
LOC_Os01g60070
OsAffx.23867.1.S1_at--501--5191Chr01:35072622..35072646 (25 bp)
GCAATGCATCATCGACCTAGCTATT
LOC_Os01g60070
Target Sequence 
GTACAGCTTTGGGTCTGTCATGCTTGAGCTACTAAGCAGAAGGCTTCCCCTAGCGAAGGGCAGATTTATTGATCGGGAAT
TCAGGATGGCAATAGATGCAAGCAACTACGACTACTATGGCCTGCAATGCATCATCGACCTAGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis