Browse Element(s) Details


Os.12301.1.S1_at

Description gb:AK067372.1
DB_XREF= gi:32977390
TID=Os.12301.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106K01, full insert sequence.
FL= gb:AK100897.1 gb:AK063950.1 gb:AK067372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4015011/11glycosyl transferase family 17 protein, putative, expressed
LOC_Os03g149001/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40090Os.49749.1.S1_at11/114+23648459..23652978Zinc finger, ZZ type family protein, expressed
LOC_Os04g40100Os.21022.1.S1_at10/114+23657229..23659836NPH3 family protein, expressed
LOC_Os04g40110OsAffx.26401.1.S1_at11/114+23661918..23662253hypothetical protein
LOC_Os04g40120NANA4+23662749..23663234hypothetical protein
LOC_Os04g40130Os.51821.1.S1_at11/114+23663563..23666129Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed
LOC_Os04g40160OsAffx.26402.1.S1_at11/114+23678469..23682309hypothetical protein
LOC_Os04g40170OsAffx.14214.1.S1_at11/114+23692317..23692953hypothetical protein
LOC_Os04g40180Os.50983.1.S1_at11/114+23693789..23696092expressed protein
LOC_Os04g40190Os.11411.2.S1_a_at11/114+23695137..23697917expressed protein
LOC_Os04g40190Os.27023.1.A1_at10/114+23695137..23697917expressed protein
LOC_Os04g40190Os.46604.1.S1_s_at2/114+23695137..23697917expressed protein
LOC_Os04g40200OsAffx.26403.1.S1_at11/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40200OsAffx.32172.1.S1_s_at1/114+23699937..23701782HNH endonuclease domain-containing protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0005886cellular_componentplasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12301.1.S1_at--817--9091Chr04:23674268..23674292 (25 bp)
TGCTCCGTCGTTGGAAATTGCCGCA
LOC_Os04g40150
Os.12301.1.S1_at--327--731Chr04:23674244..23674268 (25 bp)
ATGATTGCGTGAGCACTTCTTCTGT
LOC_Os04g40150
Os.12301.1.S1_at--505--3653Chr04:23674226..23674250 (25 bp)
CTTCTGTTTCTTCATCCATCATTGA
LOC_Os04g40150
Os.12301.1.S1_at--206--2071Chr04:23674202..23674226 (25 bp)
ACTTGAGCGCTTGTCTGGTATGTGT
LOC_Os04g40150
Os.12301.1.S1_at--893--6911Chr04:23674185..23674209 (25 bp)
GTATGTGTCCTGTGGTCAATCCGAG
LOC_Os04g40150
Os.12301.1.S1_at--657--2831Chr04:23674116..23674140 (25 bp)
AAGTTATTCCTTCTTGTGCGTCTAA
LOC_Os04g40150
Os.12301.1.S1_at--1035--9071Chr04:23674036..23674060 (25 bp)
TGCTAGGTTCAAACAGCTCGCTGTC
LOC_Os04g40150
Os.12301.1.S1_at--320--111Chr04:23673886..23673910 (25 bp)
ATTCTCTGATCACTACCCTATTATT
LOC_Os04g40150
Os.12301.1.S1_at--302--2271Chr04:23673839..23673863 (25 bp)
AAATCGGTGTTCTATTGTGCTCTGG
LOC_Os04g40150
Os.12301.1.S1_at--1094--10811Chr04:23673825..23673849 (25 bp)
TTGTGCTCTGGTTGCCTCAAATCAA
LOC_Os04g40150
Os.12301.1.S1_at--965--2291Chr04:23673733..23673757 (25 bp)
AAATGGTTATTTGTCGCTGTTCTTC
LOC_Os04g40150
Target Sequence 
TGCTCCGTCGTTGGAAATTGCCGCATGATTGCGTGAGCACTTCTTCTGTTTCTTCATCCATCATTGACTTGAGCGCTTGT
CTGGTATGTGTCCTGTGGTCAATCCGAGGCAATATCACACACAAGTACACAACCCAATGCCCAAGTTGAGCTAAGTTATT
CCTTCTTGTGCGTCTAATCTACCGTCTCTTGACCTGTTCTCCAAGTGGTTTAGCAGCTGGTTGGTAGTGAATTGCTAGGT
TCAAACAGCTCGCTGTCTGCAGGCCCGGCCTGGCTGGATCGACAGGTGGATGCTTCTATTATCGGTGGGCAAGGTATATT
GCGTATAGAACTATAGATAGGCTTGGAGGACTTGGGCAGTTGGGCGAAGCGGTCAGTGAAACATTCTCTGATCACTACCC
TATTATTGGTACTCCGTACTTGGTATAGCAAATCGGTGTTCTATTGTGCTCTGGTTGCCTCAAATCAACAAGAGGTTTGA
GATGGATACTACTACTACTCGTGTAGCCAGTTGTTTTTTCCGTTGGCCAGCCACAAAATGGTTATTTGTCGCTGTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis