Browse Element(s) Details


Os.12319.1.S1_x_at

Description gb:AU165669
DB_XREF= gi:11565033
DB_XREF=AU165669
CLONE=E3945
TID=Os.12319.1
CNT=35
FEA=EST
TIER=Stack
STK=12
UG=Os.12319 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2623011/11Pollen allergen family protein, expressed
LOC_Os04g251509/11Pollen allergen family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26190Os.9665.1.S1_at6/114+15244356..15245046Pollen allergen family protein
LOC_Os04g26200OsAffx.26159.1.S1_at10/114+15247619..15248553hypothetical protein
LOC_Os04g26210OsAffx.22711.4.A1_x_at1/114+15255500..15256105transposon protein, putative, unclassified
LOC_Os04g26220Os.25407.1.S1_at2/114+15259580..15260027Pollen allergen family protein, expressed
LOC_Os04g26230Os.12319.1.S1_x_at11/114+15267834..15268516Pollen allergen family protein, expressed
LOC_Os04g26240Os.48553.2.S1_x_at11/114+15273087..15275023F-box domain containing protein, expressed
LOC_Os04g26250NANA4+15285083..15287342retrotransposon protein, putative, LINE subclass
LOC_Os04g26260Os.48553.2.S1_x_at4/114+15288863..15290591hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12319.1.S1_x_at--686--4412Chr04:15268011..15268035 (25 bp)
GCCAGTAGTCTAGAGCTTGTCACCA
LOC_Os04g26230
Os.12319.1.S1_x_at--122--7132Chr04:15268100..15268124 (25 bp)
GTCATCATCTAACACCTGGACGATC
LOC_Os04g26230
Os.12319.1.S1_x_at--267--4112Chr04:15268211..15268235 (25 bp)
CGAAAGCTTCACTGCTGGCTCTGAA
LOC_Os04g26230
Os.12319.1.S1_x_at--441--7412Chr04:15268281..15268305 (25 bp)
GTGTTGGGTCACATGAGAATTATGA
LOC_Os04g26230
Os.12319.1.S1_x_at--425--7832Chr04:15268287..15268311 (25 bp)
GGTCACATGAGAATTATGAACCTCT
LOC_Os04g26230
Os.12319.1.S1_x_at--306--10252Chr04:15268345..15268369 (25 bp)
TTTGAGCGAGCGAATAATTAATTTT
LOC_Os04g26230
Os.12319.1.S1_x_at--884--7271Chr04:15268372..15268396 (25 bp)
GTGGTTAGTTTTTTGTAATAGGCTG
LOC_Os04g26230
Os.12319.1.S1_x_at--886--10051Chr04:15268377..15268401 (25 bp)
TAGTTTTTTGTAATAGGCTGGTGTT
LOC_Os04g26230
Os.12319.1.S1_x_at--966--892Chr04:15268391..15268415 (25 bp)
AGGCTGGTGTTAAAATAAGGCATAC
LOC_Os04g26230
Os.12319.1.S1_x_at--891--5912Chr04:15268441..15268465 (25 bp)
GAGCTATATGCGAGCATGGTTTTGA
LOC_Os04g26230
Os.12319.1.S1_x_at--997--4872Chr04:15268443..15268467 (25 bp)
GCTATATGCGAGCATGGTTTTGAAT
LOC_Os04g26230
Target Sequence 
GCCAGTAGTCTAGAGCTTGTCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGGCAAGGACTGGGTGGC
GCTCAAGGAGTCATCATCTAACACCTGGACGATCAAAAGTGAGGCGCCGCTCAAGGGCCCCTTCTCTGTCCGCTTCCTTG
TCAAGAATGGCGGCTACCGCGTCGTCGATGATGTCATCCCCGAAAGCTTCACTGCTGGCTCTGAATATAAGAGTGGCATC
CAACTCTAAGTAAGAGGCATGCATACTCTTGTGTTGGGTCACATGAGAATTATGAACCTCTAAATAATTATCTCTTAAAA
GAGATCACGCCANGTTTGAGCGAGCGAATAATTAATTTTCTGTGGTTAGTTTTTTGTAATAGGCTGGTGTTAAAATAAGG
CATACATGTGTACTCCAAAATATTGTTGTGGAGCTATATGCGAGCATGGTTTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12319.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis