Browse Element(s) Details


Os.48553.2.S1_x_at

Description gb:AK073994.1
DB_XREF= gi:32984017
TID=Os.48553.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072H16, full insert sequence.
FL= gb:AK073994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2624011/11F-box domain containing protein, expressed
LOC_Os04g251007/11transposon protein, putative, unclassified
LOC_Os04g251407/11F-box domain containing protein, expressed
LOC_Os04g262604/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26200OsAffx.26159.1.S1_at10/114+15247619..15248553hypothetical protein
LOC_Os04g26210OsAffx.22711.4.A1_x_at1/114+15255500..15256105transposon protein, putative, unclassified
LOC_Os04g26220Os.25407.1.S1_at2/114+15259580..15260027Pollen allergen family protein, expressed
LOC_Os04g26230Os.12319.1.S1_x_at11/114+15267834..15268516Pollen allergen family protein, expressed
LOC_Os04g26240Os.48553.2.S1_x_at11/114+15273087..15275023F-box domain containing protein, expressed
LOC_Os04g26250NANA4+15285083..15287342retrotransposon protein, putative, LINE subclass
LOC_Os04g26260Os.48553.2.S1_x_at4/114+15288863..15290591hypothetical protein
LOC_Os04g26270NANA4+15294109..15294662hypothetical protein
LOC_Os04g26280Os.55837.1.S1_x_at1/114+15294961..15296747hypothetical protein
LOC_Os04g26290NANA4+15297628..15302794retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48553.2.S1_x_at--1017--2152Chr04:14502924..14502948 (25 bp)
ACAGCGACAATTACCGTGACCGAGA
LOC_Os04g25140
Os.48553.2.S1_x_at--177--7773Chr04:14503025..14503049 (25 bp)
GGTGACTGTATCTTTGTTGGCTTAG
LOC_Os04g25140
Os.48553.2.S1_x_at--233--10454Chr04:14503046..14503070 (25 bp)
TTAGGTGGCTGCAAGTCCTTTCCTG
LOC_Os04g25140
Os.48553.2.S1_x_at--714--10274Chr04:14503064..14503088 (25 bp)
TTTCCTGCTGGTCTACATCATGGAG
LOC_Os04g25140
Os.48553.2.S1_x_at--116--1734Chr04:14503098..14503122 (25 bp)
ACCATATCTACTTTGTCCCTGATGA
LOC_Os04g25140
Os.48553.2.S1_x_at--232--2393Chr04:14469271..14469645 (25 bp)
AAACTATTAGCTTCCGACTTTGATG
LOC_Os04g25100
Os.48553.2.S1_x_at--755--1713Chr04:14503215..14503239 (25 bp)
ACCAGTTGAGTCGTGATTTCCCGGT
LOC_Os04g25140
Os.48553.2.S1_x_at--331--7894Chr04:14503242..14503266 (25 bp)
GGTTACTTCCTACCGAATGATGCTG
LOC_Os04g25140
Os.48553.2.S1_x_at--724--9812Chr04:14503283..14503307 (25 bp)
TAACTGGTTGTTTTGTGCCGCTAGT
NONE
Os.48553.2.S1_x_at--920--4512Chr04:14503299..14503323 (25 bp)
GCCGCTAGTTGCTCTTATCAAGACA
NONE
Os.48553.2.S1_x_at--524--472Chr04:14503371..14503395 (25 bp)
ATCTGCTATGCTCTTGTCACAATTC
NONE
Target Sequence 
ACAGCGACAATTACCGTGACCGAGAAGTTCTNAAAGTTGAAGTGTTTGCACTGGATGTTAACNCNAACCCTTATGGACTA
ACTGAGATTCACAGCTTGANTGGTGACTGTATCTTTGTTGGCTTAGGTGGCTGCAAGTCCTTTCCTGCTGGTCTACATCA
TGGAGTTGAAGGTGACCATATCTACTTTGTCCCTGATGATTGGAAGCCTTATGATACATTTGTGTATAGCATGAGAGATG
GTAAGATGAGGTCCTTTGNCGNTCAAACTATTAGCTTCCGACTTTGATGTGGACCAGTTGAGTCGTGATTTCCCGGTGTG
GTTACTTCCTACCGAATGATGCTGCACAGCAAAACTGATCTAACTGGTTGTTTTGTGCCGCTAGTTGCTCTTATCAAGAC
AGAGCTTACTTGTCATTAGACTCTTTGGTCATGACTATAACATGTATAATCTGCTATGCTCTTGTCACAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48553.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis