Browse Element(s) Details


Os.25407.1.S1_at

Description gb:AK069922.1
DB_XREF= gi:32979946
TID=Os.25407.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035O06, full insert sequence.
FL= gb:AK069922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2516011/11Pollen allergen family protein, expressed
LOC_Os04g262202/11Pollen allergen family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25140Os.48553.2.S1_x_at7/114+14501685..14503270F-box domain containing protein, expressed
LOC_Os04g25150Os.12319.1.S1_x_at9/114+14510075..14510750Pollen allergen family protein, expressed
LOC_Os04g25160Os.25407.1.S1_at11/114+14518959..14519650Pollen allergen family protein, expressed
LOC_Os04g25170OsAffx.22711.4.A1_x_at1/114+14523263..14523700transposon protein, putative, unclassified
LOC_Os04g25180OsAffx.26159.1.S1_at10/114+14530956..14531884hypothetical protein
LOC_Os04g25190Os.9665.1.S1_at11/114+14534210..14534900Pollen allergen family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25407.1.S1_at--156--8333Chr06:25106873..25106892 (20 bp)
GGCTGCACTATTGGTCATTGGCTCA
NONE
Os.25407.1.S1_at--71--8312Chr04:15259823..15259847 (25 bp)
GGCTCTAACACCTGGACACTCAAAA
LOC_Os04g26220
Os.25407.1.S1_at--844--2451Chr04:14519350..14519374 (25 bp)
AACACCTGGACACTCAAAAGTGAAG
LOC_Os04g25160
Os.25407.1.S1_at--97--8151Chr04:14519343..14519367 (25 bp)
GGACACTCAAAAGTGAAGCACCACT
LOC_Os04g25160
Os.25407.1.S1_at--617--7812Chr04:15260006..15260030 (25 bp)
GGTCATATTGGAATTATGAACCTCT
NONE
Os.25407.1.S1_at--618--3812Chr04:15260057..15260081 (25 bp)
CTCCATGTTCGAGCGAACCATTAAT
NONE
Os.25407.1.S1_at--385--8772Chr04:15260062..15260086 (25 bp)
TGTTCGAGCGAACCATTAATTAATT
NONE
Os.25407.1.S1_at--707--172Chr04:15260112..15260136 (25 bp)
ATTTTTTTGTAATGGGCTAGTGGCA
NONE
Os.25407.1.S1_at--825--2251Chr04:14519017..14519041 (25 bp)
AAATATTGCTGTGGAGCCATATGCA
LOC_Os04g25160
Os.25407.1.S1_at--434--231Chr04:14519015..14519039 (25 bp)
ATATTGCTGTGGAGCCATATGCAAA
LOC_Os04g25160
Os.25407.1.S1_at--420--4731Chr04:14519010..14519034 (25 bp)
GCTGTGGAGCCATATGCAAAGCATG
LOC_Os04g25160
Target Sequence 
GGCTGCACTATTGGTCATTGGCTCATGTGCCACAGAGCTCACCTTCAAGGTTGCTGAGGGCTCTAGCGCCACTAGTCTGG
AGCTCGTCACCAACGTCGCCATCTNTGAGGTGGAGGTCAAGGAGAAGGGCGGCAAGGACTGGGTGGGGCTCAAGGAGTCN
GGCTCTAACACCTGGACACTCAAAAGTGAAGCACCACTCAAGGGCCCCTTCTCCGTTCGCTTCCTTGTCAAGAACGGTGG
CTACCGTGTNGTCGATGATGTCATCCCTGAAAGCTTTACTGCCGGCTCTGAATATAAGAGTGGCATCCAACTCTAAGTAA
CAGGCATNCATACTCTTGTGTTGGGTCATATTGGAATTATGAACCTCTAAATAATTATGTCTTAAAAGAGATCNCTCCAT
GTTCGAGCGAACCATTAATTAATTTTCTATTAATTAATTTTCTGTGGTTATTTTTTTGTAATGGGCTAGTGGCAAAATAA
GGCATACATGTGTACTCCAAAATATTGCTGTGGAGCCATATGCAAAGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis