Browse Element(s) Details


Os.12323.1.S1_a_at

Description gb:AK064763.1
DB_XREF= gi:32974781
TID=Os.12323.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.12323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H07, full insert sequence.
FL= gb:AK064763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4965011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49590Os.54732.1.S1_at11/114+29358868..29362046regulatory protein, putative, expressed
LOC_Os04g49600OsAffx.4129.1.S1_at11/114+29362520..29363676hypothetical protein
LOC_Os04g49610Os.9407.1.S1_at11/114+29364754..29366574expressed protein
LOC_Os04g49620Os.51206.1.S1_at11/114+29369164..29371427expressed protein
LOC_Os04g49630OsAffx.14346.1.S1_at10/114+29372531..29374632hypothetical protein
LOC_Os04g49640OsAffx.19542.3.S1_x_at3/114+29377372..29381311retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49650Os.12323.1.S1_a_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.2.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.1.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49660OsAffx.26384.4.S1_at3/114+29391364..29392042expressed protein
LOC_Os04g49670OsAffx.4131.1.S1_at11/114+29400272..29402411hypothetical protein
LOC_Os04g49670Os.8681.1.S1_at11/114+29400272..29402411hypothetical protein
LOC_Os04g49680Os.7198.1.S1_at11/114+29405298..29406030expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12323.1.S1_a_at--160--8631Chr04:29387594..29387618 (25 bp)
TGCGGAAGGAGCACCGGAACCACCA
LOC_Os04g49650
Os.12323.1.S1_a_at--922--4211Chr04:29387489..29387513 (25 bp)
CCGCGTTGCGCGTGTGAGACCGATC
LOC_Os04g49650
Os.12323.1.S1_a_at--375--10711Chr04:29387484..29387508 (25 bp)
TTGCGCGTGTGAGACCGATCGAGCC
LOC_Os04g49650
Os.12323.1.S1_a_at--511--7471Chr04:29387478..29387502 (25 bp)
GTGTGAGACCGATCGAGCCGCATCC
LOC_Os04g49650
Os.12323.1.S1_a_at--218--8911Chr04:29387475..29387499 (25 bp)
TGAGACCGATCGAGCCGCATCCGCG
LOC_Os04g49650
Os.12323.1.S1_a_at--339--10351Chr04:29387422..29387446 (25 bp)
TTTTATTTTCGGGACTTCTGGTGCG
LOC_Os04g49650
Os.12323.1.S1_a_at--318--10211Chr04:29387419..29387443 (25 bp)
TATTTTCGGGACTTCTGGTGCGACA
LOC_Os04g49650
Os.12323.1.S1_a_at--186--9551Chr04:29387416..29387440 (25 bp)
TTTCGGGACTTCTGGTGCGACACGG
LOC_Os04g49650
Os.12323.1.S1_a_at--948--2051Chr04:29387409..29387433 (25 bp)
ACTTCTGGTGCGACACGGGCAGGAC
LOC_Os04g49650
Os.12323.1.S1_a_at--997--3451Chr04:29387390..29387414 (25 bp)
CAGGACGACGGAGACAAATACATTT
LOC_Os04g49650
Os.12323.1.S1_a_at--1113--8051Chr04:29387381..29387405 (25 bp)
GGAGACAAATACATTTTCACAACAA
LOC_Os04g49650
Target Sequence 
TGCGGAAGGAGCACCGGAACCACCACCACCACCACCGGCACCACCACCAGCAGCCACAGCCGCGGCCGGCCATCGACGCC
AACCCGTGGGGCACCGCGCGAGGCCCCGCGTTGCGCGTGTGAGACCGATCGAGCCGCATCCGCGCGTCGGGCGCGCGGGG
AGGCCACGTCTTTTTTATTTTCGGGACTTCTGGTGCGACACGGGCAGGACGACGGAGACAAATACATTTTCACAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12323.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis