Browse Element(s) Details


Os.12323.2.S1_at

Description gb:AK070920.1
DB_XREF= gi:32980943
TID=Os.12323.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072B01, full insert sequence.
FL= gb:AK070920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4965011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49590Os.54732.1.S1_at11/114+29358868..29362046regulatory protein, putative, expressed
LOC_Os04g49600OsAffx.4129.1.S1_at11/114+29362520..29363676hypothetical protein
LOC_Os04g49610Os.9407.1.S1_at11/114+29364754..29366574expressed protein
LOC_Os04g49620Os.51206.1.S1_at11/114+29369164..29371427expressed protein
LOC_Os04g49630OsAffx.14346.1.S1_at10/114+29372531..29374632hypothetical protein
LOC_Os04g49640OsAffx.19542.3.S1_x_at3/114+29377372..29381311retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49650Os.12323.1.S1_a_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.2.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.1.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49660OsAffx.26384.4.S1_at3/114+29391364..29392042expressed protein
LOC_Os04g49670OsAffx.4131.1.S1_at11/114+29400272..29402411hypothetical protein
LOC_Os04g49670Os.8681.1.S1_at11/114+29400272..29402411hypothetical protein
LOC_Os04g49680Os.7198.1.S1_at11/114+29405298..29406030expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12323.2.S1_at--831--8471Chr04:29386934..29386958 (25 bp)
TGGAAGCCGTTTGTTTCGCCGAAGC
LOC_Os04g49650
Os.12323.2.S1_at--549--10851Chr04:29386897..29386921 (25 bp)
TTGGAGGTCATCAAGGGCCTGTCCC
LOC_Os04g49650
Os.12323.2.S1_at--317--3871Chr04:29386879..29386903 (25 bp)
CTGTCCCTTTGCCAAGCTGCAAAAT
LOC_Os04g49650
Os.12323.2.S1_at--1022--2851Chr04:29386852..29386876 (25 bp)
AAGTGCCCAAGGAGTCCTGACAGAA
LOC_Os04g49650
Os.12323.2.S1_at--28--7891Chr04:29386807..29386831 (25 bp)
GGTTATGGTCCTTCTAGATGTTAGC
LOC_Os04g49650
Os.12323.2.S1_at--201--1251Chr04:29386750..29386774 (25 bp)
AGTTGTGTCTTTAGTATGTCGATGC
LOC_Os04g49650
Os.12323.2.S1_at--74--8971Chr04:29386669..29386693 (25 bp)
TGAAACCGAAGAGGCTTGCTTTACT
LOC_Os04g49650
Os.12323.2.S1_at--580--10711Chr04:29386654..29386678 (25 bp)
TTGCTTTACTTGTTGCTTCCCTACT
LOC_Os04g49650
Os.12323.2.S1_at--199--9071Chr04:29386641..29386665 (25 bp)
TGCTTCCCTACTTTTGCTTTTGCTG
LOC_Os04g49650
Os.12323.2.S1_at--1091--10332Chr12:25841458..25841477 (20 bp)
TTTTGCTGGGCTCAACTGTAAGCGT
NONE
Os.12323.2.S1_at--217--7051Chr04:29386607..29386631 (25 bp)
GTAAGCGTGTGAAACCCAACAAGTT
LOC_Os04g49650
Target Sequence 
TGGAAGCCGTTTGTTTCGCCGAAGCTGTTAGGGGGATTTGGAGGTCATCAAGGGCCTGTCCCTTTGCCAAGCTGCAAAAT
CTAAGTGCCCAAGGAGTCCTGACAGAAAAACAAGTTCTTGAAGTTAAGGTTATGGTCCTTCTAGATGTTAGCATGGAGTA
GATTTCTTTATGATGAGAACACAGAGTTGTGTCTTTAGTATGTCGATGCAAGCTTATTTACTTGTTCTTTAGAAACAGAG
AGGAAAACCCCGGTTCCAACATATTTGAAACCGAAGAGGCTTGCTTTACTTGTTGCTTCCCTACTTTTGCTTTTGCTGGG
CTCAACTGTAAGCGTGTGAAACCCAACAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12323.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis