Browse Element(s) Details


Os.12399.1.S1_at

Description gb:AK069564.1
DB_XREF= gi:32979588
TID=Os.12399.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033143D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019G16, full insert sequence.
FL= gb:AK103755.1 gb:AK069564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3208011/11Chitinase class I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32040Os.17567.2.S1_a_at11/119+19121545..19124609No apical meristem protein, expressed
LOC_Os09g32050Os.5166.1.S1_at11/119+19124990..19129456Chaperone protein dnaJ 10, putative, expressed
LOC_Os09g32060OsAffx.17981.1.S1_at11/119+19134581..19135324hypothetical protein
LOC_Os09g32070NANA9+19136562..19137512retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g32080Os.12399.1.S1_at11/119+19147631..19149620Chitinase class I family protein, expressed
LOC_Os09g32090Os.8255.1.S1_x_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32090Os.8255.2.S1_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32100Os.16365.1.S1_at11/119+19165945..19167413expressed protein
LOC_Os09g32120OsAffx.5723.1.S1_x_at3/119+19173967..19178953hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12399.1.S1_at--1114--9591Chr09:19148955..19148979 (25 bp)
TCATCATCTCGCACTACCAGTACTA
LOC_Os09g32080
Os.12399.1.S1_at--1001--6631Chr09:19149151..19149175 (25 bp)
GTTGTATACATCTTCTTGCTACTGC
LOC_Os09g32080
Os.12399.1.S1_at--905--10551Chr09:19149163..19149187 (25 bp)
TTCTTGCTACTGCAATCGCTATTGC
LOC_Os09g32080
Os.12399.1.S1_at--743--71Chr09:19149203..19149227 (25 bp)
ATTGCCATTGCTGTTGCCTCGTGAG
LOC_Os09g32080
Os.12399.1.S1_at--793--10691Chr09:19149216..19149240 (25 bp)
TTGCCTCGTGAGCTATACAGATTAA
LOC_Os09g32080
Os.12399.1.S1_at--540--7931Chr09:19149242..19149266 (25 bp)
GGATTCTTCATCAGTGTGAGGAGCT
LOC_Os09g32080
Os.12399.1.S1_at--673--5891Chr09:19149262..19149286 (25 bp)
GAGCTGTGGTTTGCATTGGTGTATT
LOC_Os09g32080
Os.12399.1.S1_at--924--1951Chr09:19149317..19149341 (25 bp)
ACTGTGTGTGTGATGCCTATGGGAT
LOC_Os09g32080
Os.12399.1.S1_at--336--8151Chr09:19149345..19149369 (25 bp)
GGAAATTTGTTGTAGCCCTTGTTGT
LOC_Os09g32080
Os.12399.1.S1_at--504--6971Chr09:19149356..19149380 (25 bp)
GTAGCCCTTGTTGTACCATAGTGTA
LOC_Os09g32080
Os.12399.1.S1_at--192--291Chr09:19149373..19149397 (25 bp)
ATAGTGTACATTTTCATTCCATTTG
LOC_Os09g32080
Target Sequence 
TCATCATCTCGCACTACCAGTACTACCTCGACCTCATGGGCGTCGGCCGCGAGCACTCCGGCGACAACCGCGACTGCGCC
GAGCAGGCCGCCTTCAACCCCTCCTACAAGAAGCCCGACGATCAGCAGCAACAAAGCTAGAACAGATCACCCCCAATTCC
CCCCAATTCCACGGTAAAGAATTCACCCAATGTGTTGTTGTATACATCTTCTTGCTACTGCAATCGCTATTGCCAATGCA
AACCAACCATTGCCATTGCTGTTGCCTCGTGAGCTATACAGATTAACGGATTCTTCATCAGTGTGAGGAGCTGTGGTTTG
CATTGGTGTATTTCTGAGTAGCGGATTTTGAGGGAAGTGTCAACTGTGTGTGTGATGCCTATGGGATTTGGGAAATTTGT
TGTAGCCCTTGTTGTACCATAGTGTACATTTTCATTCCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis