Browse Element(s) Details


Os.12405.1.S1_at

Description gb:AB029059.1
DB_XREF= gi:5106370
GEN=OsIF1-1
TID=Os.12405.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12405 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsIF1-1 mRNA for F1F0-ATPase inhibitor protein, complete cds.
PROD=F1F0-ATPase inhibitor protein
FL= gb:AK060402.1 gb:AK099200.1 gb:AB029059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4446011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44410NANA8+27809197..27809775Harpin-induced protein 1 containing protein, expressed
LOC_Os08g44420Os.48045.1.S1_at4/118+27810155..27815928125 kDa kinesin-related protein, putative, expressed
LOC_Os08g44430Os.10833.1.S1_at11/118+27823458..27826135synaptobrevin family protein, putative, expressed
LOC_Os08g44440Os.12998.1.S1_at11/118+27826616..27830199Multiple myeloma tumor-associated protein 2 homolog, putative, expressed
LOC_Os08g44450Os.12334.1.S1_x_at11/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44450Os.12334.2.S1_at5/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44460Os.12405.1.S1_at11/118+27833353..27835109expressed protein
LOC_Os08g44460OsAffx.17513.1.S1_at10/118+27833353..27835109expressed protein
LOC_Os08g44470OsAffx.6135.1.S1_s_at11/118+27835512..27837858expressed protein
LOC_Os08g44480Os.33777.1.S1_at11/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44480OsAffx.29659.2.S1_s_at10/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44490NANA8+27846694..27849986retrotransposon protein, putative, unclassified
LOC_Os08g44500NANA8+27850606..27856739retrotransposon protein, putative, unclassified
LOC_Os08g44510Os.27475.1.S1_at10/118+27858716..27866582gibberellin action negative regulator SPY, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042030molecular_functionATPase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12405.1.S1_at--376--3591Chr08:27833603..27833624 (22 bp)
CGTCTACGTCCAGGTTTATTTGAAG
LOC_Os08g44460
Os.12405.1.S1_at--336--3271Chr08:27834904..27834928 (25 bp)
CAACTAGGAGTGATGTGCTTCTGTC
LOC_Os08g44460
Os.12405.1.S1_at--817--8691Chr08:27834917..27834941 (25 bp)
TGTGCTTCTGTCTGAAGACGGACTT
LOC_Os08g44460
Os.12405.1.S1_at--89--1411Chr08:27834932..27834956 (25 bp)
AGACGGACTTGTTTCACATGCCTAT
LOC_Os08g44460
Os.12405.1.S1_at--400--591Chr08:27834949..27834973 (25 bp)
ATGCCTATGTTGGACACCGGTGTTC
LOC_Os08g44460
Os.12405.1.S1_at--404--2171Chr08:27834962..27834986 (25 bp)
ACACCGGTGTTCATACATGTCCTAG
LOC_Os08g44460
Os.12405.1.S1_at--1116--3971Chr08:27834966..27834990 (25 bp)
CGGTGTTCATACATGTCCTAGGATG
LOC_Os08g44460
Os.12405.1.S1_at--910--1551Chr08:27835021..27835045 (25 bp)
AGCTAGATTCATCTGCTCTGGTTTC
LOC_Os08g44460
Os.12405.1.S1_at--841--6551Chr08:27835026..27835050 (25 bp)
GATTCATCTGCTCTGGTTTCCGGTG
LOC_Os08g44460
Os.12405.1.S1_at--217--6851Chr08:27835041..27835065 (25 bp)
GTTTCCGGTGCTTGTTCATGATTGA
LOC_Os08g44460
Os.12405.1.S1_at--740--5271Chr08:27835064..27835088 (25 bp)
GAATGAGGCTCTATTGTGTTGGACA
LOC_Os08g44460
Target Sequence 
CGTCTACGTCCAGGTTTATTTGAAGATGGAGAGGGAGAGGATGGAGAAGCGCAAGAAGAAGCTCGAGAAGGAGAAGGCGG
AGGCAGACAAGGGCAATCCCGCCGCCTCCGACAAGAATACGGAGGGGGGATCCAACTAGGAGTGATGTGCTTCTGTCTGA
AGACGGACTTGTTTCACATGCCTATGTTGGACACCGGTGTTCATACATGTCCTAGGATGAAAGAATAAATTCTGTAAAAC
ATTTGACAGAGCTAGATTCATCTGCTCTGGTTTCCGGTGCTTGTTCATGATTGAATGAGGCTCTATTGTGTTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis