Browse Element(s) Details


Os.27475.1.S1_at

Description gb:AK065854.1
DB_XREF= gi:32975872
TID=Os.27475.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041I06, full insert sequence.
FL= gb:AK065854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4451010/11gibberellin action negative regulator SPY, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44460Os.12405.1.S1_at11/118+27833353..27835109expressed protein
LOC_Os08g44460OsAffx.17513.1.S1_at10/118+27833353..27835109expressed protein
LOC_Os08g44470OsAffx.6135.1.S1_s_at11/118+27835512..27837858expressed protein
LOC_Os08g44480Os.33777.1.S1_at11/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44480OsAffx.29659.2.S1_s_at10/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44490NANA8+27846694..27849986retrotransposon protein, putative, unclassified
LOC_Os08g44500NANA8+27850606..27856739retrotransposon protein, putative, unclassified
LOC_Os08g44510Os.27475.1.S1_at10/118+27858716..27866582gibberellin action negative regulator SPY, putative, expressed
LOC_Os08g44520Os.5480.1.S1_at11/118+27866953..27870725Peptidyl-prolyl cis-trans isomerase-like 1, putative, expressed
LOC_Os08g44530Os.20530.1.S1_at11/118+27872013..27876484Dihydroxy-acid dehydratase, putative, expressed
LOC_Os08g44540OsAffx.6136.1.S1_s_at11/118+27876837..27877725expressed protein
LOC_Os08g44550OsAffx.6137.1.S1_at11/118+27878459..27880475expressed protein
LOC_Os08g44560Os.52207.1.S1_at10/118+27881215..27887115expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006493biological_processprotein amino acid O-linked glycosylation
GO:0006625biological_processprotein targeting to peroxisome
GO:0009736biological_processcytokinin mediated signaling
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005052molecular_functionperoxisome targeting signal-1 binding
GO:0005515molecular_functionprotein binding
GO:0016262molecular_functionprotein N-acetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27475.1.S1_at--1078--2971Chr08:27865996..27866020 (25 bp)
AATGGGCACATAAGCCGGTGACCAA
LOC_Os08g44510
Os.27475.1.S1_at--144--1971Chr08:27866055..27866079 (25 bp)
ACTGACCCACTGTAGCTTGAGATGC
LOC_Os08g44510
Os.27475.1.S1_at--876--1431Chr08:27866110..27866134 (25 bp)
AGAATTCGACGCTTTGCAGGCCTAC
LOC_Os08g44510
Os.27475.1.S1_at--1090--9811Chr08:27866132..27866156 (25 bp)
TACACTGGGTGTCTCATTTGTCTGA
LOC_Os08g44510
Os.27475.1.S1_at--996--1451Chr08:27866176..27866200 (25 bp)
AGAAGAGCACTTCTGTGCCATCCGA
LOC_Os08g44510
Os.27475.1.S1_at--819--9291Chr08:27866196..27866220 (25 bp)
TCCGACGGTGATTTCTCTGGTTACA
LOC_Os08g44510
Os.27475.1.S1_at--580--1931Chr08:27866416..27866440 (25 bp)
ACGGCGGCATTTCAACAGGCTGTGT
LOC_Os08g44510
Os.27475.1.S1_at--987--431Chr08:27866451..27866475 (25 bp)
ATCTTCTAGTTCTGTGAGCCTGTTA
LOC_Os08g44510
Os.27475.1.S1_at--1015--6791Chr08:27866472..27866496 (25 bp)
GTTATTTCTTTCTACAGTCGCCATA
LOC_Os08g44510
Os.27475.1.S1_at--454--5531Chr08:27866509..27866533 (25 bp)
GAAAAATGGTGCTCTTTTATCCCCT
LOC_Os08g44510
Os.27475.1.S1_at--861--391NONE
ATCAGGTTATTATCTACACGCATCA
NONE
Target Sequence 
AATGGGCACATAAGCCGGTGACCAAGGGGAGTCGAGCATACTCCATTGATGTGGGAAACACTGACCCACTGTAGCTTGAG
ATGCACCATTGCTGTGGTGGACATTTGTTCTTACAGAATTCGACGCTTTGCAGGCCTACACTGGGTGTCTCATTTGTCTG
ACACCCACAATGGATAAGAAAGAAGAGCACTTCTGTGCCATCCGACGGTGATTTCTCTGGTTACACTTTGACCTTTGTAG
CAAATGTAAGATTGATGGGGGATATGCTTATAGAGTTTGATTTGTAGAGGTATACCCCCTGTGTAGGTTTATGAACATGA
TGGCTTCAGTTGCCATATGTTAGAAGAAACAGAGAAAGAGGAGNAAGCCCTTGTTGTAAATGCAGAAAAAACAGAACTGA
AAAACTACTAGNANTCAATTGACGGCGGCATTTCAACAGGCTGTGTCATGATGTACATCTTCTAGTTCTGTGAGCCTGTT
ATTTCTTTCTACAGTCGCCATAGTATGCTTGATAGAAAAATGGTGCTCTTTTATCCCCTTTGTCAAAAATCAGGTTATTA
TCTACACGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis