Browse Element(s) Details


Os.52207.1.S1_at

Description gb:AK065627.1
DB_XREF= gi:32975645
TID=Os.52207.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028H07, full insert sequence.
FL= gb:AK065627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4456010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44500NANA8+27850606..27856739retrotransposon protein, putative, unclassified
LOC_Os08g44510Os.27475.1.S1_at10/118+27858716..27866582gibberellin action negative regulator SPY, putative, expressed
LOC_Os08g44520Os.5480.1.S1_at11/118+27866953..27870725Peptidyl-prolyl cis-trans isomerase-like 1, putative, expressed
LOC_Os08g44530Os.20530.1.S1_at11/118+27872013..27876484Dihydroxy-acid dehydratase, putative, expressed
LOC_Os08g44540OsAffx.6136.1.S1_s_at11/118+27876837..27877725expressed protein
LOC_Os08g44550OsAffx.6137.1.S1_at11/118+27878459..27880475expressed protein
LOC_Os08g44560Os.52207.1.S1_at10/118+27881215..27887115expressed protein
LOC_Os08g44570NANA8+27893495..27899650retrotransposon protein, putative, unclassified
LOC_Os08g44580Os.28943.1.S1_x_at1/118+27900293..27903491retrotransposon protein, putative, unclassified
LOC_Os08g44590Os.54927.1.S1_at11/118+27910366..27912739oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52207.1.S1_at--481--4971Chr08:27886653..27886677 (25 bp)
GCATCAGCATGTTATTCCTCTGCTA
LOC_Os08g44560
Os.52207.1.S1_at--1094--2491Chr08:27886720..27886744 (25 bp)
AACATCTGCACTGCTGCTGGTGATA
LOC_Os08g44560
Os.52207.1.S1_at--743--1571Chr08:27886755..27886779 (25 bp)
AGCTGTTCCAGGTTTGTTGGGTATC
LOC_Os08g44560
Os.52207.1.S1_at--936--5891Chr08:27886829..27886853 (25 bp)
GAGCTGCCGCCCATGGTAATCTCAA
LOC_Os08g44560
Os.52207.1.S1_at--709--7071Chr08:27886844..27886868 (25 bp)
GTAATCTCAATTCTGGTGTTGCTGA
LOC_Os08g44560
Os.52207.1.S1_at--961--6651Chr08:27886861..27886885 (25 bp)
GTTGCTGATGACCACATAACCTGAT
LOC_Os08g44560
Os.52207.1.S1_at--721--9051NONE
TGCATGCAACTCACATAGCCCAGAA
NONE
Os.52207.1.S1_at--74--2811Chr08:27886923..27886947 (25 bp)
AAGATGCTTTCCATCATCACTCGTG
LOC_Os08g44560
Os.52207.1.S1_at--301--391Chr08:27886938..27886962 (25 bp)
ATCACTCGTGTTTTGCCTGATGCGA
LOC_Os08g44560
Os.52207.1.S1_at--795--2231Chr08:27887009..27887033 (25 bp)
AAATAATATGCCTCCCTTTTCCTTG
LOC_Os08g44560
Os.52207.1.S1_at--518--10731Chr08:27887031..27887055 (25 bp)
TTGCTTGCACTGTACATACCTGAAG
LOC_Os08g44560
Target Sequence 
GCATCAGCATGTTATTCCTCTGCTAAGCATCCACCACTGCAGAGCAACCTCATGGACAAGAAATGGCAACATCTGCACTG
CTGCTGGTGATAGGTATGGATGAGCTGTTCCAGGTTTGTTGGGTATCAGCTGATAAACTGGGACTGTTCCAGGTTTGTTG
GTATCAGCAAAAACTGGAGCTGCCGCCCATGGTAATCTCAATTCTGGTGTTGCTGATGACCACATAACCTGATAAGATGG
AAACTGCATGCAACTCACATAGCCCAGAACAAGATGCTTTCCATCATCACTCGTGTTTTGCCTGATGCGATGGAAATACC
CAGACAAGGTGAGCTTTTGCACGAAAATGACATGAAAAATAATATGCCTCCCTTTTCCTTGCTTGCACTGTACATACCTG
AAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis