Browse Element(s) Details


OsAffx.6137.1.S1_at

Description tigr:9636.m04542
TID=OsAffx.6137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4455011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44500NANA8+27850606..27856739retrotransposon protein, putative, unclassified
LOC_Os08g44510Os.27475.1.S1_at10/118+27858716..27866582gibberellin action negative regulator SPY, putative, expressed
LOC_Os08g44520Os.5480.1.S1_at11/118+27866953..27870725Peptidyl-prolyl cis-trans isomerase-like 1, putative, expressed
LOC_Os08g44530Os.20530.1.S1_at11/118+27872013..27876484Dihydroxy-acid dehydratase, putative, expressed
LOC_Os08g44540OsAffx.6136.1.S1_s_at11/118+27876837..27877725expressed protein
LOC_Os08g44550OsAffx.6137.1.S1_at11/118+27878459..27880475expressed protein
LOC_Os08g44560Os.52207.1.S1_at10/118+27881215..27887115expressed protein
LOC_Os08g44570NANA8+27893495..27899650retrotransposon protein, putative, unclassified
LOC_Os08g44580Os.28943.1.S1_x_at1/118+27900293..27903491retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6137.1.S1_at--943--5591Chr08:27879329..27879352 (24 bp)
GAAATATTCCTACTTCACAGCGTAA
LOC_Os08g44550
OsAffx.6137.1.S1_at--629--8891Chr08:27879258..27879282 (25 bp)
TGAGAAGGGCCTGATGTTCTTGTTT
LOC_Os08g44550
OsAffx.6137.1.S1_at--640--6311Chr08:27879131..27879155 (25 bp)
GATGCTATCAAACAACTCAACCAGG
LOC_Os08g44550
OsAffx.6137.1.S1_at--765--3471Chr08:27878830..27878850 (21 bp)
CAGGAGTTAGGTCCCTTTCAGGTCG
LOC_Os08g44550
OsAffx.6137.1.S1_at--696--1031Chr08:27878811..27878835 (25 bp)
AGGTCGCCTTGCTCACAGAAGAACT
LOC_Os08g44550
OsAffx.6137.1.S1_at--603--5531Chr08:27878734..27878758 (25 bp)
GAAAAACTAGCTGCCACTGCAATGG
LOC_Os08g44550
OsAffx.6137.1.S1_at--203--5271Chr08:27878689..27878713 (25 bp)
GAATGCCTCAAGCTTGCAGACAGTA
LOC_Os08g44550
OsAffx.6137.1.S1_at--1064--6391Chr08:27878664..27878688 (25 bp)
GATCTGCTGGGCTACAACTGAGGAT
LOC_Os08g44550
OsAffx.6137.1.S1_at--598--2811Chr08:27878564..27878588 (25 bp)
AAGATACGCTTGCTGGCCTTTGCGA
LOC_Os08g44550
OsAffx.6137.1.S1_at--1107--10271Chr08:27878546..27878570 (25 bp)
TTTGCGACGACTTCGGGTCATATCA
LOC_Os08g44550
OsAffx.6137.1.S1_at--209--251Chr08:27878527..27878551 (25 bp)
ATATCAGCATCCTCTAGTGCCAGGA
LOC_Os08g44550
Target Sequence 
GAAATATTCCTACTTCACAGCGTAACTGAGAAGGGCCTGATGTTCTTGTTTGCAATGCTTAAGGTTGAAGAACTCACTGT
AGATCTAAAAGAAGTAGAACGGGAGGCTGCAAGATGGAGGGAAGCATGTGAATTGGAGGTAGAAGCTGGAAAGGATGCTA
TCAAACAACTCAACCAGGAGTTAGGTCCCTTTCAGGTCGCCTTGCTCACAGAAGAACTGAGAAGGGTAAAAGCAGACTTG
GAAGCTGCAAACAGTAAGCTACAGCTGAAAGAAAAACTAGCTGCCACTGCAATGGCAGCACAAGCTGCTGCTGATGAATG
CCTCAAGCTTGCAGACAGTAGATCTGCTGGGCTACAACTGAGGATAGAAGAGTTGACAAAGCAGATAGAGCAAGAAGATG
AGCATGCAGGAAAGGAGCGAGGGAGTGCTCACAGAAGAACAAGATACGCTTGCTGGCCTTTGCGACGACTTCGGGTCATA
TCAGCATCCTCTAGTGCCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis