Browse Element(s) Details


Os.5480.1.S1_at

Description gb:AK072675.1
DB_XREF= gi:32982698
TID=Os.5480.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.5480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsCyp3 mRNA for cyclophilin, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135C15, full insert sequence.
FL= gb:AB067654.1 gb:AK072675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4452011/11Peptidyl-prolyl cis-trans isomerase-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44490NANA8+27846694..27849986retrotransposon protein, putative, unclassified
LOC_Os08g44500NANA8+27850606..27856739retrotransposon protein, putative, unclassified
LOC_Os08g44510Os.27475.1.S1_at10/118+27858716..27866582gibberellin action negative regulator SPY, putative, expressed
LOC_Os08g44520Os.5480.1.S1_at11/118+27866953..27870725Peptidyl-prolyl cis-trans isomerase-like 1, putative, expressed
LOC_Os08g44530Os.20530.1.S1_at11/118+27872013..27876484Dihydroxy-acid dehydratase, putative, expressed
LOC_Os08g44540OsAffx.6136.1.S1_s_at11/118+27876837..27877725expressed protein
LOC_Os08g44550OsAffx.6137.1.S1_at11/118+27878459..27880475expressed protein
LOC_Os08g44560Os.52207.1.S1_at10/118+27881215..27887115expressed protein
LOC_Os08g44570NANA8+27893495..27899650retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5480.1.S1_at--711--2791Chr08:27868978..27869001 (24 bp)
AAGAGGCGGCGAATCCATCTACGGA
LOC_Os08g44520
Os.5480.1.S1_at--290--5471Chr08:27868587..27868611 (25 bp)
GAACTGAAGCACACCGGCGCTGGAA
LOC_Os08g44520
Os.5480.1.S1_at--460--5211Chr08:27868565..27868589 (25 bp)
GAATTCTGTCGATGGCCAACGCTGG
LOC_Os08g44520
Os.5480.1.S1_at--647--1691Chr08:27868524..27868548 (25 bp)
AGCCAGTTCTTTATTACTCTTGCGC
LOC_Os08g44520
Os.5480.1.S1_at--390--7391Chr08:27867275..27867294 (20 bp)
GTGATAGGCCCATCCATGAAGTGAA
LOC_Os08g44520
Os.5480.1.S1_at--1014--5511Chr08:27867253..27867277 (25 bp)
GAAAATCCTGCGGACTGTGGTCAAA
LOC_Os08g44520
Os.5480.1.S1_at--644--2811Chr08:27867230..27867254 (25 bp)
AAGATTGAGGCACAGCGGGTCTACT
LOC_Os08g44520
Os.5480.1.S1_at--1029--7091Chr08:27867201..27867225 (25 bp)
GTCACTCATGACTTCTGGTATTTGG
LOC_Os08g44520
Os.5480.1.S1_at--86--8031Chr08:27867178..27867202 (25 bp)
GGAGTTGTAGCTGCTGTCAGTTTCA
LOC_Os08g44520
Os.5480.1.S1_at--87--10131Chr08:27867126..27867150 (25 bp)
TATGCAGTGGTGTATCGTTTCGGAT
LOC_Os08g44520
Os.5480.1.S1_at--570--6371Chr08:27867067..27867091 (25 bp)
GATCCGTCTTAATTATTCTCACCTG
LOC_Os08g44520
Target Sequence 
AAGAGGCGGCGAATCCATCTACGGAGCAAAGTTCGAGGATGAGATTAGGCCAGAACTGAAGCACACCGGCGCTGGAATTC
TGTCGATGGCCAACGCTGGTCCAAATACAAATGGAAGCCAGTTCTTTATTACTCTTGCGCCTTGTCAGTCACTTGATGGA
AAGCATACAATTTTTGGGAGAGTATCAAAAGGAATGGAAATTGTCAAGCGCCTTGGAAGTGTCCAGACAGACAAAAGTGA
TAGGCCCATCCATGAAGTGAAAATCCTGCGGACTGTGGTCAAAGATTGAGGCACAGCGGGTCTACTCGGTGTCACTCATG
ACTTCTGGTATTTGGAGTTGTAGCTGCTGTCAGTTTCAGGAATTGTTTCCTGCTTGTTCCGTGCTTATGCAGTGGTGTAT
CGTTTCGGATGGGCTAGTTTAGTTATTAACAACTCATGAATCGTGATCCGTCTTAATTATTCTCACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis