Browse Element(s) Details


Os.12415.1.S1_at

Description gb:AK063582.1
DB_XREF= gi:32973600
TID=Os.12415.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H11, full insert sequence.
FL= gb:AK063582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g021801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02150OsAffx.14573.1.S1_at7/119+843147..845363hypothetical protein
LOC_Os09g02160OsAffx.17529.1.S1_at9/119+848525..850927hypothetical protein
LOC_Os09g02170Os.5555.1.S1_at10/119+853841..859481UNC-50 family protein, putative, expressed
LOC_Os09g02180Os.12415.1.S1_at1/119+861778..862088expressed protein
LOC_Os09g02190Os.51689.1.S1_at1/119+863748..867401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02200NANA9+872791..873087hypothetical protein
LOC_Os09g02214Os.17380.3.S1_at11/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02214Os.17380.4.A1_x_at11/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02214Os.17380.1.S1_x_at10/119+877145..889186Na+/H+ antiporter precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12415.1.S1_at--1058--2171Chr09:861720..861744 (25 bp)
ACACGGCAAAATTTCTCCATCGATC
NONE
Os.12415.1.S1_at--225--8271Chr09:861775..861799 (25 bp)
GGCATGTCGAGCACCAATACCACAA
NONE
Os.12415.1.S1_at--604--2911Chr09:861903..861927 (25 bp)
AAGGATGAATTAGCTCCGCCGGCAC
LOC_Os09g02180
Os.12415.1.S1_at--1159--2911Chr09:862065..862089 (25 bp)
AAGGACGCGCCCAAGCAGGATTAAT
NONE
Os.12415.1.S1_at--733--9751Chr09:862086..862110 (25 bp)
TAATCCAGTCTGCATCTACTGCAAC
NONE
Os.12415.1.S1_at--208--10051Chr09:862116..862140 (25 bp)
TAGTACTAGTACCTTTGCACCTTGC
NONE
Os.12415.1.S1_at--812--3451Chr09:862146..862170 (25 bp)
CAGTCGGTCTTGCAGATATGTTCAT
NONE
Os.12415.1.S1_at--267--271Chr09:862161..862185 (25 bp)
ATATGTTCATGGACACGCCGAGTTT
NONE
Os.12415.1.S1_at--418--6811Chr09:862196..862220 (25 bp)
GTTTTCTGCGAATGCGTGATACCCA
NONE
Os.12415.1.S1_at--811--9871Chr09:862252..862276 (25 bp)
TACATCTGCTTAGCACTTACGTGCC
NONE
Os.12415.1.S1_at--833--9931Chr09:862269..862293 (25 bp)
TACGTGCCGCAGCTAAGTGTCTGTA
NONE
Target Sequence 
ACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAA
GCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGACGCG
GTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCA
CCAGATCCCCGCCGACCAGGCCAAGGACGCGCCCAAGCAGGATTAATCCAGTCTGCATCTACTGCAACTCTACTAGTACT
AGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCT
GCGAATGCGTGATACCCACCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTACGTGCCGCAGCT
AAGTGTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis