Browse Element(s) Details


OsAffx.17529.1.S1_at

Description tigr:9637.m00059
TID=OsAffx.17529.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g021609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02150OsAffx.14573.1.S1_at7/119+843147..845363hypothetical protein
LOC_Os09g02160OsAffx.17529.1.S1_at9/119+848525..850927hypothetical protein
LOC_Os09g02170Os.5555.1.S1_at10/119+853841..859481UNC-50 family protein, putative, expressed
LOC_Os09g02180Os.12415.1.S1_at1/119+861778..862088expressed protein
LOC_Os09g02190Os.51689.1.S1_at1/119+863748..867401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02200NANA9+872791..873087hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17529.1.S1_at--226--3511NONE
CATGTGATGCGGACCAAGTTAGAGT
NONE
OsAffx.17529.1.S1_at--923--1151Chr09:849317..849341 (25 bp)
AGTAAATTCTGCTCGTGGTATAAAT
LOC_Os09g02160
OsAffx.17529.1.S1_at--338--31Chr09:849340..849364 (25 bp)
ATTGGCAGGTGCATGGTTACTCTTG
LOC_Os09g02160
OsAffx.17529.1.S1_at--130--5011NONE
GCATGGTTACTCTTGGTCATTCGCC
NONE
OsAffx.17529.1.S1_at--1014--4971Chr09:850436..850460 (25 bp)
GCATCCACTGTTGCTGAGAGTACCT
LOC_Os09g02160
OsAffx.17529.1.S1_at--381--4731Chr09:850478..850502 (25 bp)
GCTGTCATTGAGAGCATGCACCTGG
LOC_Os09g02160
OsAffx.17529.1.S1_at--172--4991Chr09:850491..850515 (25 bp)
GCATGCACCTGGAGGCTAGATCTAG
LOC_Os09g02160
OsAffx.17529.1.S1_at--681--7651Chr09:850524..850548 (25 bp)
GGGAGTGTAGGGTCACCGCCACCAC
LOC_Os09g02160
OsAffx.17529.1.S1_at--25--9331Chr09:850639..850663 (25 bp)
TCCCACCACCAGGTCTGGGAGAGGG
LOC_Os09g02160
OsAffx.17529.1.S1_at--51--10691Chr09:850727..850751 (25 bp)
TTCCATCCCACCAACAGATCAGGGA
LOC_Os09g02160
OsAffx.17529.1.S1_at--431--10691Chr09:850844..850868 (25 bp)
TTGCCGTCACACCTCAAGGCTAGAG
LOC_Os09g02160
Target Sequence 
CATGTGATGCGGACCAAGTTAGAGTAAATTCTGCTCGTGGTATAAATTGGCAGGTGCATGGTTACTCTTGGTCATTCGCC
CCCATCGTCGCCGCATCCACTGTTGCTGAGAGTACCTTGAGCGTGGAGGGAGCTGCTGTCATTGAGAGCATGCACCTGGA
GGCTAGATCTAGGAAGGGAGGGGAGTGTAGGGTCACCGCCACCACTCCCTCTGCGGATGCGGCGGCGGTGGCGGCGGCCT
CCTCCCTCTGTCGCCAATCCCTCTGCTGTGTGCCACCGCCACCGGCCTCCTCCCATCCCACCACCAGGTCTGGGAGAGGG
AAGGAAGGGGAGGGTAGGGTCACCGCCACCACTTCCTCTGCTGCGCCACAGCCACTAATCTCCTTCCATCCCACCAACAG
ATCAGGGAGAGGGAAGGGTCGCCGTCGCTGCTGCCGCCACTCCCTCTGCTGCTCTACCGCCACCGATCTCCTCCCATCCC
ACCACCGGATTCGCCTCCCATTGCCGTCACACCTCAAGGCTAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis