Browse Element(s) Details


Os.12614.1.A1_at

Description gb:CR282570
DB_XREF= gi:44669136
DB_XREF=CR282570
CLONE=y642a04p3
TID=Os.12614.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12614 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g386901/11expressed protein
LOC_Os01g054601/11hypothetical protein
LOC_Os11g120401/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38650OsAffx.6073.1.S1_at11/118+24293566..24294862hypothetical protein
LOC_Os08g38660NANA8+24295998..24301351retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g38670OsAffx.6074.1.S1_at11/118+24309520..24310401hypothetical protein
LOC_Os08g38680OsAffx.6075.1.S1_at10/118+24310867..24314025hypothetical protein
LOC_Os08g38690OsAffx.17408.1.S1_at10/118+24314988..24324204expressed protein
LOC_Os08g38690Os.12614.1.A1_at1/118+24314988..24324204expressed protein
LOC_Os08g38700Os.33471.1.A1_at11/118+24331599..24335037BTB/POZ domain containing protein, expressed
LOC_Os08g38710Os.29825.1.S1_a_at11/118+24342303..24346656Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12614.1.A1_at--187--8491Chr11:6693301..6693325 (25 bp)
TGGCTCCTCAATCTGCATCAAGACT
LOC_Os11g12040
Os.12614.1.A1_at--596--6111NONE
GAGTGCTACATCTTCCTTCGATGAA
NONE
Os.12614.1.A1_at--852--2851NONE
AAGTGCATCTGCATTCATCCAATCC
NONE
Os.12614.1.A1_at--793--10852Chr11:6872973..6872997 (25 bp)
TTGGTATCTGTACATCTGGTTCATA
NONE
Os.12614.1.A1_at--1113--9512Chr11:6873028..6873257 (25 bp)
TCTCTTAGTCTCTTTGCCAGCAGGA
NONE
Os.12614.1.A1_at--561--6071NONE
GAGTCGTGACCTGAAGTTCCTTGGG
NONE
Os.12614.1.A1_at--782--10451NONE
TTACCTTGTGTTTCACTTCCAGTGA
NONE
Os.12614.1.A1_at--295--10055Chr08:24317638..24317662 (25 bp)
TAGTCCTTCCTAGATTGGTCCCATT
LOC_Os08g38690
Os.12614.1.A1_at--147--10512Chr11:6873090..6873114 (25 bp)
TTCACTTCCAGTTCTTAAATCCGTT
NONE
Os.12614.1.A1_at--893--551NONE
ATCCGTTTCAGGTAGCACACTGTTT
NONE
Os.12614.1.A1_at--25--751Chr11:6686466..6686486 (21 bp)
ATGTAGAATGATCCTTTCTTCCCGG
NONE
Target Sequence 
TGGCTCCTCAATCTGCATCAAGACTTCAGAGCAGACTGGATTCATAGAGAAATGCACCGGAAAACGCAGCATGTTCCAGA
NNTNNGNNNNNNGGAGTNGAGTGCTACATCTTCCTTCGATGAATAATTTGAAAAGTGCATCTGCATTCATCCAATCCTCT
CCAAAAAGACATTGGCTCTGGTGTACTTGGTATCTGTACATCTGGTTCATATTTTTCTTCAACAAGTCATGAAATATCGA
CTCTCTTAGTCTCTTTGCCAGCAGGAGTCGTGACCTGAAGTTCCTTGGGTCTTTACCTTGTGTTTCACTTCCAGTGAGAA
AGGCCCGGGGTCTTCCCGGCTAGCAACGCAAGCTGTGAGCTAGCCGGTCTAGGTTCGAGCCTCACCCCCTCCTTAATTCA
AAACCAATCTAGTCCTTCCTAGATTGGTCCCATTTTTTTTTGTTTCACTTCCAGTTCTTAAATCCGTTTCAGGTAGCACA
CTGTTTAATATGTAGAATGATCCTTTCTTCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12614.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis