Browse Element(s) Details


Os.12735.1.S1_s_at

Description gb:AK119708.1
DB_XREF= gi:37989331
TID=Os.12735.1
CNT=174
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-E08, full insert sequence.
FL= gb:AK119708.1 gb:AK060981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4481011/11auxin-repressed protein-like protein ARP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44770NANA11+26587236..26593178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44780NANA11+26594524..26598066retrotransposon protein, putative, unclassified
LOC_Os11g44790OsAffx.31478.1.S1_at7/1111+26598839..26601742EAP30 family protein
LOC_Os11g44800Os.49151.1.S1_at11/1111+26605149..26606026expressed protein
LOC_Os11g44810Os.12735.1.S1_at11/1111+26609579..26611197auxin-repressed protein-like protein ARP1, putative, expressed
LOC_Os11g44810Os.12735.1.S1_s_at11/1111+26609579..26611197auxin-repressed protein-like protein ARP1, putative, expressed
LOC_Os11g44820OsAffx.7415.1.S1_at11/1111+26616130..26616969expressed protein
LOC_Os11g44830OsAffx.31479.1.S1_x_at11/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44830OsAffx.31479.4.S1_x_at9/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44840OsAffx.31479.5.S1_x_at9/1111+26629929..26634029hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007582biological_processphysiological process
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12735.1.S1_s_at--96--1851Chr11:26610063..26610348 (25 bp)
ACGACTGGCTGTACAGCGACGAGAC
LOC_Os11g44810
Os.12735.1.S1_s_at--292--1651Chr11:26610049..26610073 (25 bp)
AGCGACGAGACCAGGAGCAGCCATC
LOC_Os11g44810
Os.12735.1.S1_s_at--598--8011Chr11:26609999..26610023 (25 bp)
GGAGGCTGGTCGATCTCTCTGTCAC
LOC_Os11g44810
Os.12735.1.S1_s_at--630--10271Chr11:26609968..26609992 (25 bp)
TTTGCTGGTCCTTGTGGTTATCTAA
LOC_Os11g44810
Os.12735.1.S1_s_at--726--6671Chr11:26609921..26609945 (25 bp)
GTTGCTATCTTATCTTGTTACTCTG
LOC_Os11g44810
Os.12735.1.S1_s_at--560--6771Chr11:26609905..26609929 (25 bp)
GTTACTCTGTTCCTAGTAGCTTGCT
LOC_Os11g44810
Os.12735.1.S1_s_at--352--1551Chr11:26609888..26609912 (25 bp)
AGCTTGCTGTCTCTGTTAGTACTAC
LOC_Os11g44810
Os.12735.1.S1_s_at--1130--1711Chr11:26609865..26609889 (25 bp)
ACCAGAGACCGGTACGTGTCAGCTA
LOC_Os11g44810
Os.12735.1.S1_s_at--1099--8471Chr11:26609834..26609858 (25 bp)
TGGCTCCTATCAAGGGCTAGCGACA
LOC_Os11g44810
Os.12735.1.S1_s_at--701--7471Chr11:26609791..26609815 (25 bp)
GTGTGTAAACATCTTCCATGTGTAA
LOC_Os11g44810
Os.12735.1.S1_s_at--80--9871Chr11:26609747..26609771 (25 bp)
TACTTTCAGCGTTTAATTACCTTTG
LOC_Os11g44810
Target Sequence 
ACGACTGGCTGTACAGCGACGAGACCAGGAGCAGCCATCGCTGAACTAAATAATCCCATTGATCGGAGGCTGGTCGATCT
CTCTGTCACGCCANGTTTGCTGGTCCTTGTGGTTATCTAATACGTAATTAATTATCTAGTATGTTGCTATCTTATCTTGT
TACTCTGTTCCTAGTAGCTTGCTGTCTCTGTTAGTACTACCAGAGACCGGTACGTGTCAGCTAGCCTGCTGGCTCCTATC
AAGGGCTAGCGACAACCCAAAGAAGTGTGTTTGTGTGTAAACATCTTCCATGTGTAAATACTGCCNTGTGTTTCCCTACT
TTCAGCGTTTAATTACCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12735.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis