Browse Element(s) Details


Os.12742.1.A1_at

Description gb:AK073940.1
DB_XREF= gi:32983963
TID=Os.12742.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076E07, full insert sequence.
FL= gb:AK073940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3634011/11Targeting protein for Xklp2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36330NANA11+20904367..20905055hypothetical protein
LOC_Os11g36340Os.12742.1.A1_at11/1111+20912279..20916419Targeting protein for Xklp2 containing protein, expressed
LOC_Os11g36350OsAffx.19187.1.S1_at11/1111+20917284..20918663F-box domain containing protein
LOC_Os11g36360OsAffx.22947.2.S1_x_at1/1111+20919358..20924513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g36370NANA11+20928801..20931941retrotransposon protein, putative, unclassified
LOC_Os11g36380NANA11+20933016..20938724retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12742.1.A1_at--87--5611Chr11:20915871..20915895 (25 bp)
GACAACTCGGTTGAAATCCCTCCTG
LOC_Os11g36340
Os.12742.1.A1_at--809--4911Chr11:20915979..20916003 (25 bp)
GCTTCGAATGAAGTTCCAGTCCAAG
LOC_Os11g36340
Os.12742.1.A1_at--974--7911Chr11:20916003..20916027 (25 bp)
GGTTGATTCGATTGCACATTTGGTT
LOC_Os11g36340
Os.12742.1.A1_at--169--10851Chr11:20916022..20916046 (25 bp)
TTGGTTATTTAATCCCTTCTTGCAG
LOC_Os11g36340
Os.12742.1.A1_at--260--3051Chr11:20916032..20916056 (25 bp)
AATCCCTTCTTGCAGTCTTGTGAAT
LOC_Os11g36340
Os.12742.1.A1_at--857--6571Chr11:20916084..20916108 (25 bp)
GATTCGCTCAAAGTACCGTGGATTT
LOC_Os11g36340
Os.12742.1.A1_at--1008--7111Chr11:20916109..20916133 (25 bp)
GTCATTTCCGGAGTAGACATCCCCT
LOC_Os11g36340
Os.12742.1.A1_at--192--331Chr11:20916287..20916311 (25 bp)
ATAAGTTGATTCTCCTTGGTCCTTG
LOC_Os11g36340
Os.12742.1.A1_at--691--10851Chr11:20916302..20916326 (25 bp)
TTGGTCCTTGCCCAGTATATCCTTC
LOC_Os11g36340
Os.12742.1.A1_at--215--10151Chr11:20916319..20916343 (25 bp)
TATCCTTCTTCACCTGTTGCAGGCT
LOC_Os11g36340
Os.12742.1.A1_at--695--2971Chr11:20916362..20916386 (25 bp)
AATGTCCAATGCTGTCTGTTTAAAT
LOC_Os11g36340
Target Sequence 
GACAACTCGGTTGAAATCCCTCCTGCTGAACCTTCTGGCCCAGAGGGGCTCACTGTTGAACATGGTGTTGAGGATGCAAC
AGGGCCAGACCGGGCCACCACTTTGGTTGCTTCGAATGAAGTTCCAGTCCAAGGTTGATTCGATTGCACATTTGGTTATT
TAATCCCTTCTTGCAGTCTTGTGAATAGTGAGGTGTGTGCTTCATGGAAAGTTGATTCGCTCAAAGTACCGTGGATTTGT
CATTTCCGGAGTAGACATCCCCTTTTTTTCAGCTTGTCATTAAGCATTCCATTGTATATTGCTTGAAAATTTGTTCATGT
TAAAATTTTATTTCTTGTGTATATTGGAGTTATATGTCAATGGGCAGGCTAGGACTGTTGCAGAACATCAATGCAACTTG
TGAATTATTTTGTGTTATAAGTTGATTCTCCTTGGTCCTTGCCCAGTATATCCTTCTTCACCTGTTGCAGGCTTGCAGCA
GTTGGTTTNCAAATGTCCAATGCTGTCTGTTTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12742.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis