Browse Element(s) Details


OsAffx.19187.1.S1_at

Description tigr:9639.m03278
TID=OsAffx.19187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3635011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36330NANA11+20904367..20905055hypothetical protein
LOC_Os11g36340Os.12742.1.A1_at11/1111+20912279..20916419Targeting protein for Xklp2 containing protein, expressed
LOC_Os11g36350OsAffx.19187.1.S1_at11/1111+20917284..20918663F-box domain containing protein
LOC_Os11g36360OsAffx.22947.2.S1_x_at1/1111+20919358..20924513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g36370NANA11+20928801..20931941retrotransposon protein, putative, unclassified
LOC_Os11g36380NANA11+20933016..20938724retrotransposon protein, putative, unclassified
LOC_Os11g36390Os.25752.1.S1_at11/1111+20941735..20951593BRCA1 C Terminus domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19187.1.S1_at--403--7551Chr11:20917799..20917823 (25 bp)
GTGGCCACGATGCTCATGTTCGCGA
LOC_Os11g36350
OsAffx.19187.1.S1_at--222--5371Chr11:20917743..20917767 (25 bp)
GAAGACCATGTGCAGGTACCTCGCC
LOC_Os11g36350
OsAffx.19187.1.S1_at--556--4091Chr11:20917632..20917656 (25 bp)
CGACGCGAGCACGACGGAGATGTAC
LOC_Os11g36350
OsAffx.19187.1.S1_at--281--1311Chr11:20917615..20917639 (25 bp)
AGATGTACGTCGTCATGCTCAGGCC
LOC_Os11g36350
OsAffx.19187.1.S1_at--862--5831Chr11:20917586..20917610 (25 bp)
GACCTCTACTTCTACGAGCAGGTGA
LOC_Os11g36350
OsAffx.19187.1.S1_at--379--4671Chr11:20917495..20917519 (25 bp)
GCGTGGAGGACTACCCCATGTTTCG
LOC_Os11g36350
OsAffx.19187.1.S1_at--324--3511Chr11:20917479..20917503 (25 bp)
CATGTTTCGCGGCAACTGCGCCTAC
LOC_Os11g36350
OsAffx.19187.1.S1_at--1061--8511Chr11:20917406..20917430 (25 bp)
TGGAAGCGGCTGGACCTTGCTCTGT
LOC_Os11g36350
OsAffx.19187.1.S1_at--486--1851Chr11:20917346..20917370 (25 bp)
ACGAAGCTGCGGGACATGTGGCCAC
LOC_Os11g36350
OsAffx.19187.1.S1_at--231--3311Chr11:20917324..20917348 (25 bp)
CACTCCACCATCCATGGCAAGATAA
LOC_Os11g36350
OsAffx.19187.1.S1_at--584--571Chr11:20917315..20917339 (25 bp)
ATCCATGGCAAGATAATTCCCCGCC
LOC_Os11g36350
Target Sequence 
GTGGCCACGATGCTCATGTTCGCGACGCCGCCGCGTCCGTGCAACCACCACCTCAAGAAGACCATGTGCAGGTACCTCGC
CATCACGCCGCAGCACCCGCAGCACGTCGCCGGCGGCCTCGAATTCCTCGTCGTGGAGCGGAGGTGGCGCAGGTCGGGGA
GCGACGACGACGCGAGCACGACGGAGATGTACGTCGTCATGCTCAGGCCTCTCGACCTCTACTTCTACGAGCAGGTGAGC
CTGCCCGGCGGCGTGGGGGGCGACCTCGCGCTGTTCGTCGGCCACGCCGGCGCCGCCTGCCTCCGCGTGGAGGACTACCC
CATGTTTCGCGGCAACTGCGCCTACCTCACCGACGAAAGCGACGGCGACGGCGACCACGCGAACCCGCCGTCGTGGAAGC
GGCTGGACCTTGCTCTGTGGGAGTTCGGCGGGAGCAACTACCGCGGGAGGTTGACGAAGCTGCGGGACATGTGGCCACTC
CACCATCCATGGCAAGATAATTCCCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis