Browse Element(s) Details

Os.12745.1.S1_at

Description

gb:AK100838.1
DB_XREF= gi:32986047
TID=Os.12745.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU078644(E0685),C72841(E2351),AU078645(E0685), AU030746(E60179) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana BAC F11O4; Medicago truncatula MtN21 (AF096370) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123E20, full insert sequence.
FL= gb:AK107585.1 gb:AK100838.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01840	11/11	Integral membrane protein DUF6 containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01780	Os.52860.1.A1_at	11/11	6	+	449988..452733	expressed protein
LOC_Os06g01790	Os.52389.1.S1_x_at	11/11	6	+	453863..456206	expressed protein
LOC_Os06g01800	OsAffx.15220.1.S1_s_at	11/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	Os.55780.1.S1_at	10/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	OsAffx.15220.2.S1_s_at	8/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	Os.48472.1.A1_at	7/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	OsAffx.14814.1.S1_at	1/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01810	NA	NA	6	+	465385..466183	hypothetical protein
LOC_Os06g01820	OsAffx.10379.1.A1_at	2/11	6	+	469319..470927	hypothetical protein
LOC_Os06g01820	Os.51646.1.S1_at	1/11	6	+	469319..470927	hypothetical protein
LOC_Os06g01830	OsAffx.15222.1.S1_at	9/11	6	+	472151..472577	hypothetical protein
LOC_Os06g01840	Os.12745.1.S1_at	11/11	6	+	476099..478173	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01850	Os.10696.1.S1_at	11/11	6	+	478199..480658	Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os06g01860	Os.36672.1.S1_at	11/11	6	+	483347..484309	expressed protein
LOC_Os06g01860	Os.36672.2.S1_x_at	11/11	6	+	483347..484309	expressed protein
LOC_Os06g01870	NA	NA	6	+	488917..489695	hypothetical protein
LOC_Os06g01879	NA	NA	6	+	497435..498193	hypothetical protein
LOC_Os06g01890	NA	NA	6	+	501599..503591	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12745.1.S1_at--355--351	1	Chr06:477485..477509 (25 bp)	CATGGTGCATCGAGAAGCGCGGTCC	LOC_Os06g01840
Os.12745.1.S1_at--823--267	1	Chr06:477499..477523 (25 bp)	AAGCGCGGTCCAGTGTTCGTCGCAG	LOC_Os06g01840
Os.12745.1.S1_at--689--365	1	Chr06:477525..477549 (25 bp)	CTTCATTCCGGTGGTGCAGATCATT	LOC_Os06g01840
Os.12745.1.S1_at--338--883	1	Chr06:477557..477581 (25 bp)	TGATTGACTTCACTGTCCTCCATGA	LOC_Os06g01840
Os.12745.1.S1_at--134--353	1	Chr06:477577..477599 (23 bp)	CATGAACAGCTCTTCCTTGGAAGCG	LOC_Os06g01840
Os.12745.1.S1_at--628--163	1	Chr06:477704..477728 (25 bp)	AGCGTGCTGGGATCTGTACTTGTGA	LOC_Os06g01840
Os.12745.1.S1_at--162--29	1	Chr06:477728..477752 (25 bp)	ATAGGTGGCCTTTATCTTCTGCTGT	LOC_Os06g01840
Os.12745.1.S1_at--628--175	1	Chr06:477777..477801 (25 bp)	ACCTCCCTCCAAAAGTTGCTGAACA	LOC_Os06g01840
Os.12745.1.S1_at--803--899	1	Chr06:477873..477897 (25 bp)	TGAAGAGTGGTGACAGCGTCCCCTT	LOC_Os06g01840
Os.12745.1.S1_at--396--41	1	Chr06:477943..477967 (25 bp)	ATCAGGGCAGCCATGTTGTTGTACA	LOC_Os06g01840
Os.12745.1.S1_at--1015--605	1	Chr06:478052..478076 (25 bp)	GAGTTAATTAGCTACCACTTCAGAA	LOC_Os06g01840

Target Sequence

CATGGTGCATCGAGAAGCGCGGTCCAGTGTTCGTCGCAGCCTTCATTCCGGTGGTGCAGATCATTGTTTCAGTGATTGAC
TTCACTGTCCTCCATGAACAGCTCTTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCT
GTGGGGCAAGAGGCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCAACAGCAAC
AGCAACAGCAGCAACAACAGCAGCAGCAAGTGCAACTCTGAATGAAGAGTGGTGACAGCGTCCCCTTTGGGATTTTAACA
AATAAGTTCTCCACCAACTTTTTTTTTTGTCAATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATG
CATGAAGTTATTTAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAGTTAATTAGCTACCACT
TCAGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis