Browse Element(s) Details


Os.12770.2.S1_x_at

Description gb:AK121155.1
DB_XREF= gi:37990778
TID=Os.12770.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079A15, full insert sequence.
FL= gb:AK121155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6431011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64290NANA3+36258864..36275639Myosin head family protein, expressed
LOC_Os03g64300Os.12770.1.S1_at11/113+36279017..36285874Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os03g64310Os.12770.2.S1_x_at11/113+36284692..36285887expressed protein
LOC_Os03g64310Os.12770.3.A1_at10/113+36284692..36285887expressed protein
LOC_Os03g64320Os.17148.1.A1_at11/113+36286777..36297543expressed protein
LOC_Os03g64330Os.55938.1.S1_at11/113+36299579..36300677aquaporin PIP2.8, putative, expressed
LOC_Os03g64340OsAffx.13601.1.S1_at11/113+36305302..36306704heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12770.2.S1_x_at--947--8151Chr03:36285678..36285702 (25 bp)
GGAAACTGCCGCGACGAGTGCCTCG
LOC_Os03g64310
Os.12770.2.S1_x_at--318--7711Chr03:36285651..36285675 (25 bp)
GGGTGCCAAGGTTGGGCCATCATCT
LOC_Os03g64310
Os.12770.2.S1_x_at--703--5331Chr03:36285594..36285618 (25 bp)
GAAGTCGGCATCTCCGCCATGAGCA
LOC_Os03g64310
Os.12770.2.S1_x_at--1096--9631Chr03:36285544..36285568 (25 bp)
TCAGGATCAGCAGCATCCATCACAG
LOC_Os03g64310
Os.12770.2.S1_x_at--8--7711Chr03:36285481..36285505 (25 bp)
GGGTCTCGACCCTGACAAAATCTGA
LOC_Os03g64310
Os.12770.2.S1_x_at--1014--4831Chr03:36285440..36285464 (25 bp)
GCTACCATTCATTTTCAAATCCCAT
LOC_Os03g64310
Os.12770.2.S1_x_at--647--531Chr03:36285422..36285446 (25 bp)
ATCCCATATACATACACTGCACTAC
LOC_Os03g64310
Os.12770.2.S1_x_at--178--8211Chr03:36285383..36285407 (25 bp)
GGAATAATTCATGTTTTCTCTTCAA
LOC_Os03g64310
Os.12770.2.S1_x_at--1020--3751Chr03:36285366..36285390 (25 bp)
CTCTTCAAATTCCATTGCTCTTTCT
LOC_Os03g64310
Os.12770.2.S1_x_at--497--3131Chr03:36285331..36285355 (25 bp)
AATTTACACAGCACGTTCCACATAG
LOC_Os03g64310
Os.12770.2.S1_x_at--588--10231Chr03:36285301..36285325 (25 bp)
TATTGTCAACATTTTTGCCCCAACC
LOC_Os03g64310
Target Sequence 
GGAAACTGCCGCGACGAGTGCCTCGCCGGGTGCCAAGGTTGGGCCATCATCTGCCACCTCTCCTGCAACAGCGCCTGCCT
CGGCGAAGTCGGCATCTCCGCCATGAGCACCGCCACACCACAGTCCATCACGGNTCAGGATCAGCAGCATCCATCACAGC
AGCAGCAACAAGCACAACNANTCGGTCTCCGTGCTNAAGGGTCTCGACCCTGACAAAATCTGAAACGAATTGTTTTNTTG
CTACCATTCATTTTCAAATCCCATATACATACACTGCACTACACACACACACACATGGAATAATTCATGTTTTCTCTTCA
AATTCCATTGCTCTTTCTATTAATTATTAATTTACACAGCACGTTCCACATAGATTAGTATTGTCAACATTTTTGCCCCA
ACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12770.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis