Browse Element(s) Details


Os.17148.1.A1_at

Description gb:AK100706.1
DB_XREF= gi:32985915
TID=Os.17148.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023115B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023115B06, full insert sequence.
FL= gb:AK100706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6432011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64290NANA3+36258864..36275639Myosin head family protein, expressed
LOC_Os03g64300Os.12770.1.S1_at11/113+36279017..36285874Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os03g64310Os.12770.2.S1_x_at11/113+36284692..36285887expressed protein
LOC_Os03g64310Os.12770.3.A1_at10/113+36284692..36285887expressed protein
LOC_Os03g64320Os.17148.1.A1_at11/113+36286777..36297543expressed protein
LOC_Os03g64330Os.55938.1.S1_at11/113+36299579..36300677aquaporin PIP2.8, putative, expressed
LOC_Os03g64340OsAffx.13601.1.S1_at11/113+36305302..36306704heavy metal-associated domain containing protein, expressed
LOC_Os03g64350Os.6230.1.S1_at11/113+36315337..36320471Rhodanese-like domain containing protein, expressed
LOC_Os03g64360Os.5298.1.S1_a_at11/113+36320675..36323432F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009416biological_processresponse to light stimulus
GO:0009718biological_processanthocyanin biosynthesis
GO:0015995biological_processchlorophyll biosynthesis
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17148.1.A1_at--842--10051Chr03:36294658..36294682 (25 bp)
TAGGGCTCGAGTACTAGACCCAGTA
LOC_Os03g64320
Os.17148.1.A1_at--228--1371Chr03:36294673..36294697 (25 bp)
AGACCCAGTATCGACAGTTTCAGTG
LOC_Os03g64320
Os.17148.1.A1_at--1017--4951Chr03:36294809..36294833 (25 bp)
GCATCATCTGTTGACGGAGCCTTAG
LOC_Os03g64320
Os.17148.1.A1_at--351--4591Chr03:36296869..36296893 (25 bp)
GCTGAAAACCCTCATTTCGCGAGAT
LOC_Os03g64320
Os.17148.1.A1_at--724--10631Chr03:36296884..36296908 (25 bp)
TTCGCGAGATGACTCTGGTTCTTCA
LOC_Os03g64320
Os.17148.1.A1_at--395--9611Chr03:36296906..36297214 (25 bp)
TCATCTAAAGCTTCTCGGTCGTTCT
LOC_Os03g64320
Os.17148.1.A1_at--989--1951Chr03:36297252..36297276 (25 bp)
ACTGTGACCGTGAGTTGGCTGATCC
LOC_Os03g64320
Os.17148.1.A1_at--265--4751Chr03:36297269..36297293 (25 bp)
GCTGATCCTGATCTGTCATGTTAAT
LOC_Os03g64320
Os.17148.1.A1_at--1117--10691Chr03:36297369..36297393 (25 bp)
TTGCCTACATCTGTGTACGTTGCTT
LOC_Os03g64320
Os.17148.1.A1_at--1019--7291Chr03:36297412..36297436 (25 bp)
GTGCGCGTTTATGTGACTTTCTGTA
LOC_Os03g64320
Os.17148.1.A1_at--842--6391Chr03:36297499..36297523 (25 bp)
GATCGATCGATTCCATTTGCATATA
LOC_Os03g64320
Target Sequence 
TAGGGCTCGAGTACTAGACCCAGTATCGACAGTTTCAGTGGAGGAGACCCCTGAAGCAAATGAAAAACCTCGTAATAAGG
AATCAAAAGGCTTCAGGAAACTTTTGAAGTTTGGTAGGAAGAGCCACACATCAGGTACAATGGATTCTGATGCATCATCT
GTTGACGGAGCCTTAGCCGGAGACGGGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTAAAGC
TTCTCGGTCGTTCTCCCTACTGTCACCGTTCCGCAGGCAGAAGGTGATTGTACTGTGACCGTGAGTTGGCTGATCCTGAT
CTGTCATGTTAATGCAGCTTGTGCATTAACTAATTTGTTTCTTAGTAGTACATACACATACAGACATGTTAGTAGTACAT
ACATACTATTGCCTACATCTGTGTACGTTGCTTGTAAGCTGTGTATTTTGAGTGCGCGTTTATGTGACTTTCTGTATATG
TAGTACTTGGTATGCATATGTATATTATGTTACACANCAAGCACAAAACACATTCGTTTGATCGATCGATTCCATTTGCA
TATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17148.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis